Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082730.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | Solyc02g082730.2.1 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058784 | Potato | cytosol | 98.6 | 98.6 |
| Solyc03g006270.2.1 | Tomato | cytosol | 92.09 | 91.67 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 85.58 | 84.79 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 85.12 | 84.33 |
| KRH50137 | Soybean | cytosol, mitochondrion | 85.12 | 84.33 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 85.12 | 84.33 |
| TraesCS5D01G188900.1 | Wheat | cytosol | 84.65 | 84.26 |
| TraesCS5B01G182200.1 | Wheat | cytosol | 84.65 | 84.26 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 84.65 | 84.26 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 84.65 | 84.26 |
| Bra010860.1-P | Field mustard | cytosol | 84.19 | 84.19 |
| CDX90160 | Canola | cytosol | 84.19 | 84.19 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 84.65 | 83.87 |
| AT5G60860.1 | Thale cress | cytosol | 84.65 | 83.87 |
| KRH30863 | Soybean | cytosol | 84.65 | 83.87 |
| OQU89311 | Sorghum | cytosol | 84.19 | 83.8 |
| Os09t0327100-01 | Rice | plasma membrane | 84.19 | 83.8 |
| CDX79548 | Canola | cytosol | 76.28 | 83.25 |
| AT2G33870.1 | Thale cress | cytosol | 84.19 | 83.03 |
| CDY35757 | Canola | cytosol | 84.19 | 83.03 |
| CDY34094 | Canola | cytosol | 84.19 | 83.03 |
| CDY30818 | Canola | cytosol | 84.19 | 83.03 |
| CDY15659 | Canola | cytosol | 84.19 | 83.03 |
| Bra030105.1-P | Field mustard | cytosol | 84.19 | 83.03 |
| Bra032914.1-P | Field mustard | cytosol | 84.19 | 83.03 |
| CDX94631 | Canola | cytosol | 84.19 | 83.03 |
| EES19950 | Sorghum | cytosol | 83.26 | 82.87 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 83.26 | 82.87 |
| GSMUA_Achr3P15540_001 | Banana | cytosol | 83.26 | 82.87 |
| Bra022959.1-P | Field mustard | cytosol | 83.72 | 82.57 |
| Solyc12g014080.1.1 | Tomato | cytosol | 83.26 | 82.49 |
| AT3G15060.1 | Thale cress | cytosol | 83.26 | 82.49 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 82.79 | 82.41 |
| TraesCS7B01G200600.1 | Wheat | cytosol | 82.79 | 82.41 |
| AT1G28550.1 | Thale cress | cytosol | 83.26 | 82.11 |
| TraesCS1B01G426300.1 | Wheat | cytosol | 82.33 | 81.94 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 82.33 | 81.94 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 82.33 | 81.94 |
| TraesCS7D01G289000.1 | Wheat | cytosol | 82.33 | 81.94 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 82.33 | 81.57 |
| Os05t0564400-02 | Rice | plasma membrane | 82.33 | 81.57 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 81.86 | 81.48 |
| GSMUA_Achr1P11940_001 | Banana | cytosol | 81.86 | 81.48 |
| GSMUA_Achr8P27180_001 | Banana | cytosol | 81.4 | 81.02 |
| CDY55638 | Canola | cytosol | 81.4 | 80.65 |
| CDY01540 | Canola | cytosol | 81.4 | 80.65 |
| CDY20100 | Canola | cytosol | 81.4 | 80.28 |
| Bra021589.1-P | Field mustard | cytosol | 81.4 | 80.28 |
| Bra012597.1-P | Field mustard | cytosol | 80.93 | 80.18 |
| Bra001581.1-P | Field mustard | cytosol | 80.93 | 79.82 |
| AT4G18430.1 | Thale cress | cytosol | 80.47 | 79.72 |
| CDX75804 | Canola | cytosol | 80.47 | 79.36 |
| CDX82451 | Canola | cytosol | 80.47 | 79.36 |
| GSMUA_Achr5P09130_001 | Banana | cytosol | 79.53 | 78.8 |
| CDX76522 | Canola | cytosol | 79.07 | 78.34 |
| GSMUA_Achr4P02760_001 | Banana | cytosol | 68.84 | 77.89 |
| Bra021009.1-P | Field mustard | cytosol | 78.6 | 77.88 |
| TraesCS3D01G244500.1 | Wheat | cytosol | 76.74 | 75.69 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 76.74 | 75.69 |
| Solyc07g055290.2.1 | Tomato | plastid | 76.28 | 75.23 |
| GSMUA_Achr1P04780_001 | Banana | cytosol | 69.77 | 75.0 |
| Solyc02g072180.2.1 | Tomato | cytosol | 75.35 | 74.65 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 65.58 | 73.44 |
| Zm00001d043935_P001 | Maize | cytosol | 73.49 | 71.82 |
| CDY60884 | Canola | cytosol | 74.42 | 71.75 |
| OQU87300 | Sorghum | cytosol | 73.02 | 71.69 |
| Solyc06g005810.2.1 | Tomato | cytosol, unclear | 67.44 | 67.13 |
| Solyc01g103380.2.1 | Tomato | nucleus | 66.05 | 66.36 |
| Solyc06g076450.2.1 | Tomato | plastid | 66.05 | 66.05 |
| Solyc05g052900.2.1 | Tomato | cytosol | 65.12 | 65.12 |
| Solyc10g045550.1.1 | Tomato | nucleus | 64.19 | 64.19 |
| Solyc03g079900.2.1 | Tomato | cytosol | 64.19 | 64.19 |
| Solyc01g086850.2.1 | Tomato | cytosol | 61.4 | 58.67 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 67.91 | 57.71 |
| Solyc11g010100.1.1 | Tomato | cytosol | 59.53 | 57.14 |
| Solyc10g079030.1.1 | Tomato | plastid | 60.0 | 57.08 |
| Solyc04g012180.2.1 | Tomato | cytosol, unclear | 58.6 | 56.76 |
| Solyc03g064020.2.1 | Tomato | cytosol | 59.07 | 56.7 |
| Solyc01g096220.2.1 | Tomato | plastid | 57.21 | 50.62 |
| TraesCS3B01G272300.1 | Wheat | cytosol | 76.74 | 47.69 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:K4CY60 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF842 | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | EnsemblPlantsGene:Solyc10g008840.2 |
| EnsemblPlants:Solyc10g008840.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI000276BB99 | : | : | : |
Description
No Description!
Coordinates
chr10:+:2900438..2901941
Molecular Weight (calculated)
23894.2 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.287
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTYRSEEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSQ QSKSTIGVEF ATRTIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITRHVT
101: FENVARWLKE LRDHTDQSIV VMLVGNKADL RHLRAVPTDE SKGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSK KALDAGDDPA SLPAGQTIHI
201: GNDVSAVKKG GCCSS
101: FENVARWLKE LRDHTDQSIV VMLVGNKADL RHLRAVPTDE SKGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSK KALDAGDDPA SLPAGQTIHI
201: GNDVSAVKKG GCCSS
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.