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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400053686 Potato cytosol 99.54 99.54
KRH29738 Soybean endoplasmic reticulum 91.67 91.67
Solyc06g076450.2.1 Tomato plastid 90.74 91.16
KRH24729 Soybean endoplasmic reticulum, nucleus 90.74 90.74
VIT_06s0004g05550.t01 Wine grape cytosol, extracellular 89.81 89.4
Bra018190.1-P Field mustard cytosol 89.35 88.94
AT3G46830.1 Thale cress cytosol 87.96 87.56
CDY33014 Canola cytosol 87.5 87.1
AT1G07410.1 Thale cress cytosol 86.11 86.92
AT5G59150.1 Thale cress cytosol 87.04 86.64
Bra002589.1-P Field mustard cytosol 87.04 86.64
CDY06703 Canola cytosol 86.11 86.11
Bra015578.1-P Field mustard cytosol 85.65 85.65
CDY06256 Canola cytosol 84.72 85.51
CDY09919 Canola cytosol 84.72 85.51
Bra020334.1-P Field mustard cytosol 85.65 85.25
CDY02867 Canola cytosol 85.65 85.25
CDY32661 Canola cytosol 85.65 85.25
CDY71720 Canola cytosol 84.72 84.33
Solyc03g079900.2.1 Tomato cytosol 83.8 84.19
Solyc05g052900.2.1 Tomato cytosol 82.87 83.26
CDX86101 Canola cytosol 89.35 75.39
Solyc01g103380.2.1 Tomato nucleus 72.69 73.36
CDX80299 Canola cytosol 87.5 73.26
Solyc10g045550.1.1 Tomato nucleus 71.76 72.09
Solyc07g053480.2.1 Tomato cytosol, plastid 70.83 70.51
Bra031573.1-P Field mustard cytosol 83.33 70.31
Solyc12g010790.1.1 Tomato cytosol, nucleus, unclear 68.52 68.2
Solyc10g008840.2.1 Tomato cytosol 67.13 67.44
CDX99094 Canola cytosol 89.35 67.25
Solyc07g055290.2.1 Tomato plastid 67.59 66.97
Solyc12g014080.1.1 Tomato cytosol 67.13 66.82
Solyc03g006270.2.1 Tomato cytosol 66.2 66.2
Solyc02g072180.2.1 Tomato cytosol 65.74 65.44
Solyc11g010100.1.1 Tomato cytosol 62.04 59.82
Solyc04g012180.2.1 Tomato cytosol, unclear 60.65 59.01
Solyc10g079030.1.1 Tomato plastid 61.57 58.85
Solyc01g086850.2.1 Tomato cytosol 60.65 58.22
Solyc03g064020.2.1 Tomato cytosol 59.26 57.14
Solyc01g096220.2.1 Tomato plastid 56.94 50.62
Protein Annotations
MapMan:22.8.1.1Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0016787UniProt:K4C363InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF495SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
EnsemblPlantsGene:Solyc06g005810.2EnsemblPlants:Solyc06g005810.2.1TIGRFAMs:TIGR00231UniParc:UPI0002765D33SEG:seg:
Description
No Description!
Coordinates
chr6:-:839934..842843
Molecular Weight (calculated)
23834.2 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.289
Length
216 amino acids
Sequence
(BLAST)
001: MGNRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKGQTF
101: DNVQRWLREL RDHADSNIVI MMAGNKSDLN HLRAVSEQDG QNLAEKEGLS FLETSALEAV NVDKAFQTIL TEIYHIISKK ALAAQAAATT TTLPGQGTTI
201: NVNDTSDNVK RGCCST
Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.