Factsheet for Solyc04g012180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060649	Potato	cytosol	98.65	98.65
Solyc11g010100.1.1	Tomato	cytosol	92.79	91.96
VIT_07s0191g00030.t01	Wine grape	cytosol	89.19	87.61
KRH31313	Soybean	endoplasmic reticulum	87.84	87.44
KRG97554	Soybean	cytosol, endoplasmic reticulum	86.94	86.55
GSMUA_Achr3P01690_001	Banana	cytosol	81.08	82.19
GSMUA_Achr8P18090_001	Banana	cytosol	79.73	81.19
Zm00001d014278_P001	Maize	extracellular, plasma membrane	78.83	80.65
GSMUA_Achr3P21290_001	Banana	cytosol	78.83	79.91
Os10t0377400-01	Rice	cytosol	77.48	79.63
TraesCS1D01G136900.1	Wheat	cytosol	77.48	79.63
TraesCS1B01G152100.1	Wheat	cytosol	77.48	79.63
TraesCS1A01G131500.2	Wheat	cytosol	77.48	79.63
OQU91938	Sorghum	cytosol	77.48	79.26
EER92725	Sorghum	cytosol	75.68	77.42
Zm00001d048222_P001	Maize	extracellular, plasma membrane	75.68	77.42
Zm00001d028002_P001	Maize	mitochondrion	75.23	76.96
Solyc01g086850.2.1	Tomato	cytosol	75.23	74.22
Solyc03g064020.2.1	Tomato	cytosol	69.37	68.75
Solyc10g079030.1.1	Tomato	plastid	68.92	67.7
CDX69367	Canola	cytosol	53.15	64.13
Solyc05g052900.2.1	Tomato	cytosol	60.81	62.79
Solyc01g103380.2.1	Tomato	nucleus	60.36	62.62
Solyc03g079900.2.1	Tomato	cytosol	60.36	62.33
HORVU1Hr1G034400.4	Barley	plasma membrane	76.58	62.27
Solyc06g076450.2.1	Tomato	plastid	59.46	61.4
Solyc07g053480.2.1	Tomato	cytosol, plastid	59.46	60.83
Solyc06g005810.2.1	Tomato	cytosol, unclear	59.01	60.65
Solyc01g096220.2.1	Tomato	plastid	66.22	60.49
Solyc10g045550.1.1	Tomato	nucleus	58.11	60.0
Solyc10g008840.2.1	Tomato	cytosol	56.76	58.6
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	56.76	58.06
Solyc02g072180.2.1	Tomato	cytosol	56.76	58.06
Solyc12g014080.1.1	Tomato	cytosol	56.31	57.6
Solyc07g055290.2.1	Tomato	plastid	56.31	57.34
Solyc03g006270.2.1	Tomato	cytosol	55.41	56.94

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:K4BPS0	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc04g012180.2	EnsemblPlants:Solyc04g012180.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002766408	:	:

Description

No Description!

Coordinates

chr4:-:4461532..4467418

Molecular Weight (calculated)

24645.4 Da

IEP (calculated)

8.637

GRAVY (calculated)

-0.266

Length

222 amino acids

Sequence
(BLAST)

001: MASGYGDSSQ KIDYVFKVVL IGDSAVGKSQ ILARFSRNEF SLDSKATIGV EFQTRTLVIQ HKSVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QTFDHIPRWL EELRAHADRN IVIILIGNKT DLKDQRAVPT EDAKEFAQKE GLFFLETSAL EATNVEDAFS TVLTEIFNIV NKKNLAADDY PPNGNPASLS
201: GKKILVPGPA QVIPEKRACC RS

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.