CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048222_P001	Maize	extracellular, plasma membrane	99.08	99.08
Zm00001d028002_P001	Maize	mitochondrion	98.62	98.62
OQU91938	Sorghum	cytosol	91.71	91.71
GSMUA_Achr8P18090_001	Banana	cytosol	83.41	83.03
GSMUA_Achr3P21290_001	Banana	cytosol	82.03	81.28
GSMUA_Achr3P01690_001	Banana	cytosol	81.57	80.82
Solyc11g010100.1.1	Tomato	cytosol	80.18	77.68
PGSC0003DMT400041813	Potato	cytosol	80.18	77.68
KRH31313	Soybean	endoplasmic reticulum	79.26	77.13
VIT_07s0191g00030.t01	Wine grape	cytosol	80.18	76.99
KRG97554	Soybean	cytosol, endoplasmic reticulum	78.8	76.68
Solyc04g012180.2.1	Tomato	cytosol, unclear	77.42	75.68
PGSC0003DMT400060649	Potato	cytosol	77.42	75.68
AT5G65270.1	Thale cress	cytosol	78.34	75.22
Bra037810.1-P	Field mustard	cytosol	77.88	75.11
CDY18682	Canola	cytosol	77.88	75.11
CDX69843	Canola	cytosol	76.5	74.44
CDX81274	Canola	cytosol	77.42	74.01
Bra009040.1-P	Field mustard	cytosol	76.04	73.99
CDX96994	Canola	cytosol	76.04	73.99
KRH59301	Soybean	cytosol, endoplasmic reticulum	77.88	73.8
Bra011818.1-P	Field mustard	cytosol	74.19	72.2
EER96479	Sorghum	cytosol	75.12	72.12
CDY69836	Canola	cytosol	74.19	71.88
AT4G39990.1	Thale cress	cytosol	72.81	70.54
KRH43151	Soybean	cytosol, endoplasmic reticulum	74.65	68.35
KXG37238	Sorghum	cytosol	60.83	61.4
OQU89311	Sorghum	cytosol	59.91	60.19
EES19950	Sorghum	cytosol	59.45	59.72
EER89913	Sorghum	cytosol	58.99	58.99
CDX69367	Canola	cytosol	49.77	58.7
EES19812	Sorghum	cytosol	59.45	58.64
EER98344	Sorghum	cytosol	59.91	58.3
OQU77196	Sorghum	cytosol	58.06	57.27
EES17935	Sorghum	cytosol	57.14	57.14
OQU87300	Sorghum	cytosol	55.3	54.79
EER90389	Sorghum	cytosol	50.69	52.63
EER90540	Sorghum	cytosol	54.84	50.42
EER97073	Sorghum	cytosol	56.22	47.66
CDX69369	Canola	cytosol	73.73	39.22

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8081914	UniProt:C5WUT9	EnsemblPlants:EER92725	ProteinID:EER92725
ProteinID:EER92725.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3001G475500	SUPFAM:SSF52540	unigene:Sbi.8630	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A829C8	RefSeq:XP_002465727.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:74783315..74785574

Molecular Weight (calculated)

24003.7 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.203

Length

217 amino acids

Sequence
(BLAST)

001: MAGAGDKVDY VFKVVLIGDS AVGKSQILAR FARNEFSLDS KATIGVEFQT RTLVIDHRSV KAQIWDTAGQ ERYRAVTSAY YRGALGALLV YDITRRQSFD
101: HIPRWLDELR AHADKNIVIM LVGNKSDLEE QRAVSTEDAK EFAEKENLFF LETSALQATN VESAFQTVLT EIFKIHSKKN MVSEPKSNGV APAMAGTKVL
201: VPGPAQEIPK SKCCSSM

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.