Factsheet for GSMUA_Achr8P18090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21290_001	Banana	cytosol	93.12	92.69
GSMUA_Achr3P01690_001	Banana	cytosol	93.12	92.69
Zm00001d014278_P001	Maize	extracellular, plasma membrane	84.86	85.25
Zm00001d048222_P001	Maize	extracellular, plasma membrane	83.49	83.87
OQU91938	Sorghum	cytosol	83.49	83.87
EER92725	Sorghum	cytosol	83.03	83.41
Zm00001d028002_P001	Maize	mitochondrion	83.03	83.41
TraesCS1D01G136900.1	Wheat	cytosol	82.57	83.33
TraesCS1B01G152100.1	Wheat	cytosol	82.57	83.33
TraesCS1A01G131500.2	Wheat	cytosol	82.57	83.33
Os10t0377400-01	Rice	cytosol	82.57	83.33
Solyc11g010100.1.1	Tomato	cytosol	83.49	81.25
PGSC0003DMT400041813	Potato	cytosol	83.49	81.25
VIT_07s0191g00030.t01	Wine grape	cytosol	83.94	80.97
Solyc04g012180.2.1	Tomato	cytosol, unclear	81.19	79.73
PGSC0003DMT400060649	Potato	cytosol	81.19	79.73
KRH31313	Soybean	endoplasmic reticulum	81.19	79.37
KRG97554	Soybean	cytosol, endoplasmic reticulum	80.28	78.48
KRH59301	Soybean	cytosol, endoplasmic reticulum	79.36	75.55
AT5G65270.1	Thale cress	cytosol	77.98	75.22
Bra037810.1-P	Field mustard	cytosol	77.52	75.11
CDY18682	Canola	cytosol	77.52	75.11
CDX69843	Canola	cytosol	76.15	74.44
CDX81274	Canola	cytosol	77.06	74.01
Bra009040.1-P	Field mustard	cytosol	75.69	73.99
CDX96994	Canola	cytosol	75.69	73.99
Bra011818.1-P	Field mustard	cytosol	75.23	73.54
CDY69836	Canola	cytosol	75.23	73.21
AT4G39990.1	Thale cress	cytosol	74.31	72.32
KRH43151	Soybean	cytosol, endoplasmic reticulum	76.61	70.46
GSMUA_Achr1P16540_001	Banana	cytosol	62.84	68.16
GSMUA_Achr3P11810_001	Banana	cytosol	69.72	67.56
GSMUA_Achr1P19620_001	Banana	cytosol	69.72	65.8
HORVU1Hr1G034400.4	Barley	plasma membrane	81.19	64.84
GSMUA_Achr9P03770_001	Banana	cytosol	52.75	61.5
GSMUA_Achr2P05630_001	Banana	cytosol	60.55	61.4
GSMUA_Achr5P28770_001	Banana	cytosol	60.09	60.37
GSMUA_Achr7P26890_001	Banana	cytosol	51.38	59.89
GSMUA_Achr6P18430_001	Banana	cytosol	61.01	59.11
GSMUA_Achr1P11940_001	Banana	cytosol	58.26	58.8
CDX69367	Canola	cytosol	49.54	58.7
GSMUA_Achr5P09130_001	Banana	cytosol	57.8	58.06
GSMUA_Achr4P02760_001	Banana	cytosol	50.46	57.89
GSMUA_Achr8P02230_001	Banana	plasma membrane	57.34	57.87
GSMUA_Achr8P27780_001	Banana	cytosol	47.71	57.78
GSMUA_Achr3P15680_001	Banana	plasma membrane	57.34	57.6
GSMUA_Achr6P28910_001	Banana	cytosol	57.34	57.6
GSMUA_Achr3P15540_001	Banana	cytosol	56.88	57.41
GSMUA_Achr6P14930_001	Banana	cytosol	44.95	57.31
GSMUA_Achr9P05610_001	Banana	cytosol	56.42	57.21
GSMUA_Achr8P27180_001	Banana	cytosol	55.96	56.48
GSMUA_Achr4P02540_001	Banana	cytosol	49.08	55.73
GSMUA_Achr7P14790_001	Banana	cytosol	48.17	54.69
GSMUA_Achr1P04780_001	Banana	cytosol	50.0	54.5
GSMUA_Achr9P00860_001	Banana	cytosol	56.88	53.91
GSMUA_Achr6P31790_001	Banana	cytosol	40.83	53.61
GSMUA_Achr3P13850_001	Banana	cytosol	55.5	51.71
GSMUA_Achr7P10970_001	Banana	cytosol	49.08	42.29
CDX69369	Canola	cytosol	74.31	39.71

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G18090_001	EnsemblPlants:GSMUA_Achr8P18090_001	EnsemblPlants:GSMUA_Achr8T18090_001
UniProt:M0TRG2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002969B35	:	:

Description

Ras-related protein Rab11D [Source:GMGC_GENE;Acc:GSMUA_Achr8G18090_001]

Coordinates

chr8:+:21141342..21148068

Molecular Weight (calculated)

24321.0 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.302

Length

218 amino acids

Sequence
(BLAST)

001: MAGGSDKIDY VFKVVLIGDS AVGKSQILAR FARNEFSLDS KATIGVEFQT RTLVIQHKSV KAQIWDTAGQ ERYRAVTSAY YRGAVGALMV YDITRRQSFD
101: HISRWLEELR SHADRNIVIM LVGNKTDLED QRAVTTEDAR EFAQKENLFF LETSALEATN VENAFQMVLT EIFNIVNKKN LTSDPQSNNS APALPGKKVI
201: IPGPAQEIPK SKTCCKTS

Best Arabidopsis Sequence Match ( AT4G39990.1 )
(BLAST)

001: MAGGGGYGGA SGKVDYVFKV VLIGDSAVGK SQLLARFARD EFSMDSKATI GVEFQTRTLS IEQKSIKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDMT
101: KRETFEHIPR WLEELRAHAD KNIVIILIGN KSDLEDQRAV PTEDAKEFAE KEGLFFLETS ALNATNVENS FNTLMTQIYN TVNKKNLASE GDSNNPGSLA
201: GKKILIPGSG QEIPAKTSTC CTSS

Arabidopsis Description

RABA4BRas-related protein RABA4b [Source:UniProtKB/Swiss-Prot;Acc:Q9SMQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.