Factsheet for GSMUA_Achr1P04780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02760_001	Banana	cytosol	79.0	83.16
Solyc07g053480.2.1	Tomato	cytosol, plastid	85.5	78.8
PGSC0003DMT400024319	Potato	cytosol	85.5	78.8
VIT_10s0003g00550.t01	Wine grape	cytosol	85.0	78.34
GSMUA_Achr5P09130_001	Banana	cytosol	85.0	78.34
VIT_19s0014g01820.t01	Wine grape	cytosol	83.0	76.5
PGSC0003DMT400020208	Potato	cytosol	83.0	76.5
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	82.5	76.04
KRH20359	Soybean	cytosol, endoplasmic reticulum	82.0	75.58
KRH25681	Soybean	cytosol	82.0	75.58
KRH55839	Soybean	endoplasmic reticulum	82.0	75.58
AT5G60860.1	Thale cress	cytosol	82.0	75.58
GSMUA_Achr3P15540_001	Banana	cytosol	81.5	75.46
KRH50137	Soybean	cytosol, mitochondrion	81.0	74.65
GSMUA_Achr8P27180_001	Banana	cytosol	80.5	74.54
GSMUA_Achr7P14790_001	Banana	cytosol	71.5	74.48
KRH30863	Soybean	cytosol	80.5	74.19
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	80.5	74.19
Solyc12g014080.1.1	Tomato	cytosol	80.5	74.19
GSMUA_Achr1P11940_001	Banana	cytosol	80.0	74.07
Bra010860.1-P	Field mustard	cytosol	79.0	73.49
CDX90160	Canola	cytosol	79.0	73.49
Bra032914.1-P	Field mustard	cytosol	80.0	73.39
CDY30818	Canola	cytosol	80.0	73.39
CDY34094	Canola	cytosol	80.0	73.39
CDY35757	Canola	cytosol	79.5	72.94
CDY15659	Canola	cytosol	79.5	72.94
GSMUA_Achr4P02540_001	Banana	cytosol	70.0	72.92
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	79.0	72.81
VIT_12s0028g02650.t01	Wine grape	cytosol	78.5	72.69
CDX94631	Canola	cytosol	79.0	72.48
Bra030105.1-P	Field mustard	cytosol	79.0	72.48
AT1G28550.1	Thale cress	cytosol	78.5	72.02
PGSC0003DMT400033395	Potato	cytosol	77.0	71.3
AT2G33870.1	Thale cress	cytosol	77.5	71.1
AT3G15060.1	Thale cress	cytosol	77.0	70.97
Solyc03g006270.2.1	Tomato	cytosol	76.5	70.83
PGSC0003DMT400058784	Potato	cytosol	76.0	70.7
Bra022959.1-P	Field mustard	cytosol	76.5	70.18
CDX79548	Canola	cytosol	69.0	70.05
GSMUA_Achr6P31790_001	Banana	cytosol	58.0	69.88
Solyc10g008840.2.1	Tomato	cytosol	75.0	69.77
Bra001581.1-P	Field mustard	cytosol	76.0	69.72
CDX82451	Canola	cytosol	75.5	69.27
AT4G18430.1	Thale cress	cytosol	74.5	68.66
CDX75804	Canola	cytosol	74.5	68.35
CDX76522	Canola	cytosol	73.5	67.74
CDY55638	Canola	cytosol	73.5	67.74
CDY01540	Canola	cytosol	73.5	67.74
Bra021009.1-P	Field mustard	cytosol	73.0	67.28
Bra012597.1-P	Field mustard	cytosol	73.0	67.28
KRH27001	Soybean	cytosol, endoplasmic reticulum	73.0	66.97
Bra021589.1-P	Field mustard	cytosol	72.5	66.51
CDY20100	Canola	cytosol	72.5	66.51
KRH22324	Soybean	cytosol, endoplasmic reticulum	72.5	66.51
GSMUA_Achr9P05610_001	Banana	cytosol	68.0	63.26
GSMUA_Achr3P15680_001	Banana	plasma membrane	68.5	63.13
GSMUA_Achr8P27780_001	Banana	cytosol	55.5	61.67
CDY60884	Canola	cytosol	68.0	60.99
GSMUA_Achr7P10970_001	Banana	cytosol	70.0	55.34
GSMUA_Achr2P05630_001	Banana	cytosol	59.0	54.88
GSMUA_Achr9P03770_001	Banana	cytosol	51.0	54.55
GSMUA_Achr6P14930_001	Banana	cytosol	46.5	54.39
GSMUA_Achr5P28770_001	Banana	cytosol	58.0	53.46
GSMUA_Achr7P26890_001	Banana	cytosol	49.5	52.94
GSMUA_Achr6P28910_001	Banana	cytosol	57.0	52.53
GSMUA_Achr6P18430_001	Banana	cytosol	59.0	52.44
GSMUA_Achr8P02230_001	Banana	plasma membrane	56.5	52.31
GSMUA_Achr3P11810_001	Banana	cytosol	58.0	51.56
GSMUA_Achr8P18090_001	Banana	cytosol	54.5	50.0
GSMUA_Achr1P19620_001	Banana	cytosol	57.5	49.78
GSMUA_Achr3P21290_001	Banana	cytosol	54.0	49.32
GSMUA_Achr3P01690_001	Banana	cytosol	53.5	48.86
GSMUA_Achr1P16540_001	Banana	cytosol	48.5	48.26
GSMUA_Achr3P13850_001	Banana	cytosol	52.5	44.87
GSMUA_Achr9P00860_001	Banana	cytosol	51.5	44.78

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G04780_001	EnsemblPlants:GSMUA_Achr1P04780_001	EnsemblPlants:GSMUA_Achr1T04780_001
UniProt:M0RX36	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296A8C1	SEG:seg	:

Description

Ras-related protein Rab11B [Source:GMGC_GENE;Acc:GSMUA_Achr1G04780_001]

Coordinates

chr1:+:3981729..3987024

Molecular Weight (calculated)

22790.0 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.335

Length

200 amino acids

Sequence
(BLAST)

001: MAYRADDDYD YLFKVSKSTI GVEFATRSIR VEDKVIKAQI WDTAGQERYR AITSAYYRGA VGALVVYDIT RHVTFENIER WLKELRDHTD SNIVIMLVGN
101: KADLRHLRAI NTEDAKEFSE KENAFFMETS ALESMNVENA FTEVLTQIYR VVSRKSLEAG DDPADLPKGQ TINVGTKDDV SAVKKADDWQ AYKLLICCVL

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.