Factsheet for Bra010860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90160	Canola	cytosol	100.0	100.0
CDY35757	Canola	cytosol	100.0	98.62
Bra030105.1-P	Field mustard	cytosol	99.07	97.71
Bra032914.1-P	Field mustard	cytosol	98.14	96.79
AT1G28550.1	Thale cress	cytosol	96.74	95.41
Bra022959.1-P	Field mustard	cytosol	90.23	88.99
KRH20359	Soybean	cytosol, endoplasmic reticulum	89.77	88.94
KRH50137	Soybean	cytosol, mitochondrion	88.37	87.56
VIT_10s0003g00550.t01	Wine grape	cytosol	87.91	87.1
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	87.44	87.04
TraesCS5A01G184100.1	Wheat	golgi, plastid	87.44	87.04
Os09t0327100-01	Rice	plasma membrane	86.98	86.57
OQU89311	Sorghum	cytosol	86.98	86.57
TraesCS5B01G182200.1	Wheat	cytosol	86.51	86.11
TraesCS5D01G188900.1	Wheat	cytosol	86.51	86.11
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	86.51	85.71
KRH30863	Soybean	cytosol	86.05	85.25
TraesCS7B01G200600.1	Wheat	cytosol	85.58	85.19
PGSC0003DMT400058784	Potato	cytosol	85.12	85.12
TraesCS7D01G289000.1	Wheat	cytosol	85.12	84.72
TraesCS7A01G285200.1	Wheat	cytosol	85.12	84.72
EES19950	Sorghum	cytosol	85.12	84.72
Os05t0564400-02	Rice	plasma membrane	85.12	84.33
TraesCS1A01G398400.1	Wheat	cytosol	84.65	84.26
Solyc10g008840.2.1	Tomato	cytosol	84.19	84.19
TraesCS1B01G426300.1	Wheat	cytosol	84.19	83.8
TraesCS1D01G405900.1	Wheat	cytosol	84.19	83.8
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	84.19	83.8
PGSC0003DMT400033395	Potato	cytosol	83.72	83.33
Solyc03g006270.2.1	Tomato	cytosol	83.26	82.87
GSMUA_Achr3P15540_001	Banana	cytosol	83.26	82.87
Bra001581.1-P	Field mustard	cytosol	83.72	82.57
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	82.79	82.41
GSMUA_Achr4P02760_001	Banana	cytosol	72.09	81.58
GSMUA_Achr5P09130_001	Banana	cytosol	82.33	81.57
GSMUA_Achr1P11940_001	Banana	cytosol	81.86	81.48
Bra021589.1-P	Field mustard	cytosol	82.33	81.19
GSMUA_Achr8P27180_001	Banana	cytosol	81.4	81.02
GSMUA_Achr1P04780_001	Banana	cytosol	73.49	79.0
Bra021009.1-P	Field mustard	cytosol	77.67	76.96
Bra012597.1-P	Field mustard	cytosol	77.67	76.96
TraesCS3A01G247000.1	Wheat	cytosol	77.67	76.61
TraesCS3D01G244500.1	Wheat	cytosol	77.67	76.61
GSMUA_Achr7P14790_001	Banana	cytosol	66.51	74.48
OQU87300	Sorghum	cytosol	73.02	71.69
Zm00001d043935_P001	Maize	cytosol	73.02	71.36
Bra026016.1-P	Field mustard	cytosol	71.63	71.3
Bra002589.1-P	Field mustard	cytosol	67.91	67.28
Bra032424.1-P	Field mustard	cytosol	69.77	67.26
Bra020006.1-P	Field mustard	cytosol	67.44	66.82
Bra020334.1-P	Field mustard	cytosol	66.05	65.44
Bra018190.1-P	Field mustard	cytosol	65.12	64.52
Bra015578.1-P	Field mustard	cytosol	63.72	63.43
Bra001439.1-P	Field mustard	cytosol	61.86	60.18
Bra038701.1-P	Field mustard	cytosol	61.4	59.46
Bra037516.1-P	Field mustard	cytosol	61.4	59.19
Bra009040.1-P	Field mustard	cytosol	60.93	58.74
GSMUA_Achr7P10970_001	Banana	cytosol	66.05	56.13
Bra011818.1-P	Field mustard	cytosol	58.14	56.05
Bra037810.1-P	Field mustard	cytosol	58.14	55.56
Bra031573.1-P	Field mustard	cytosol	62.79	52.73
Bra034771.1-P	Field mustard	cytosol	60.93	49.81
Bra033277.1-P	Field mustard	cytosol	54.42	49.37
TraesCS3B01G272300.1	Wheat	cytosol	77.67	48.27

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra010860	EnsemblPlants:Bra010860.1	EnsemblPlants:Bra010860.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4D307	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025454C5	:	:

Description

AT1G28550 (E=2e-115) AtRABA1i | AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding

Coordinates

chrA08:+:16830312..16831022

Molecular Weight (calculated)

23892.1 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.294

Length

215 amino acids

Sequence
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSN DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTED AKGFAERENT FFMETSALEA LNVENAFTEV LTEIYRVVSK KALEAGDDPT TALPKGQTIN
201: VGDISAVKKP GCCSA

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.