Factsheet for Bra026016.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35128	Canola	cytosol	98.61	98.61
AT1G16920.1	Thale cress	cytosol	97.22	97.22
CDY40023	Canola	cytosol	97.22	97.22
KRH27364	Soybean	endoplasmic reticulum	87.5	87.1
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.04	86.64
GSMUA_Achr4P02540_001	Banana	cytosol	74.07	83.33
GSMUA_Achr9P05610_001	Banana	cytosol	82.87	83.26
GSMUA_Achr3P15680_001	Banana	plasma membrane	83.33	82.95
GSMUA_Achr8P27780_001	Banana	cytosol	68.06	81.67
GSMUA_Achr6P31790_001	Banana	cytosol	62.04	80.72
TraesCS3D01G289400.1	Wheat	cytosol	81.94	80.09
TraesCS3B01G324300.1	Wheat	cytosol, golgi	81.48	79.64
TraesCS3A01G289600.1	Wheat	cytosol	81.48	79.64
EES19812	Sorghum	cytosol	81.02	79.55
VIT_19s0014g01160.t01	Wine grape	extracellular	87.5	75.0
Bra032424.1-P	Field mustard	cytosol	75.93	73.54
Bra001581.1-P	Field mustard	cytosol	73.15	72.48
Bra022959.1-P	Field mustard	cytosol	73.15	72.48
Bra010860.1-P	Field mustard	cytosol	71.3	71.63
Bra021589.1-P	Field mustard	cytosol	72.22	71.56
Bra032914.1-P	Field mustard	cytosol	71.76	71.1
Bra030105.1-P	Field mustard	cytosol	70.83	70.18
Bra002589.1-P	Field mustard	cytosol	69.44	69.12
Bra021009.1-P	Field mustard	cytosol	68.98	68.66
Bra020334.1-P	Field mustard	cytosol	68.52	68.2
Bra020006.1-P	Field mustard	cytosol	68.52	68.2
Bra012597.1-P	Field mustard	cytosol	68.52	68.2
Bra018190.1-P	Field mustard	cytosol	67.59	67.28
Bra015578.1-P	Field mustard	cytosol	66.67	66.67
HORVU3Hr1G071740.1	Barley	plastid	81.94	61.89
Bra009040.1-P	Field mustard	cytosol	60.19	58.3
Bra001439.1-P	Field mustard	cytosol	59.26	57.92
Bra037516.1-P	Field mustard	cytosol	59.72	57.85
Bra038701.1-P	Field mustard	cytosol	58.8	57.21
Bra011818.1-P	Field mustard	cytosol	57.87	56.05
Bra037810.1-P	Field mustard	cytosol	57.41	55.11
Bra031573.1-P	Field mustard	cytosol	65.28	55.08
Bra034771.1-P	Field mustard	cytosol	58.33	47.91
Bra033277.1-P	Field mustard	cytosol	50.46	45.99

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra026016	EnsemblPlants:Bra026016.1	EnsemblPlants:Bra026016.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	GO:GO:0042538	GO:GO:0060627	UniProt:M4EB57	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000253F27D	:	:	:	:	:

Description

AT1G16920 (E=2e-118) RAB11, ATRABA1B | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding

Coordinates

chrA06:-:6485509..6486831

Molecular Weight (calculated)

24022.5 Da

IEP (calculated)

5.188

GRAVY (calculated)

-0.330

Length

216 amino acids

Sequence
(BLAST)

001: MAGYRVEDDY DYLFKVVIIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLTVEGK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENIDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN GSVPKGEKIE
201: VKNDVSALKK LGCCSN

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.