Factsheet for TraesCS3B01G324300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G289400.1	Wheat	cytosol	99.55	99.55
TraesCS3A01G289600.1	Wheat	cytosol	99.55	99.55
EES19812	Sorghum	cytosol	85.52	85.91
GSMUA_Achr4P02540_001	Banana	cytosol	73.76	84.9
GSMUA_Achr3P15680_001	Banana	plasma membrane	82.35	83.87
GSMUA_Achr9P05610_001	Banana	cytosol	81.45	83.72
AT1G16920.1	Thale cress	cytosol	80.54	82.41
GSMUA_Achr8P27780_001	Banana	cytosol	66.97	82.22
KRH27364	Soybean	endoplasmic reticulum	80.54	82.03
CDY35128	Canola	cytosol	80.09	81.94
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	80.09	81.57
Bra026016.1-P	Field mustard	cytosol	79.64	81.48
CDY40023	Canola	cytosol	79.19	81.02
CDX96799	Canola	cytosol	79.19	81.02
TraesCS7B01G273300.1	Wheat	plastid	78.73	80.18
GSMUA_Achr6P31790_001	Banana	cytosol	60.18	80.12
HORVU3Hr1G071740.1	Barley	plastid	99.55	76.92
TraesCS5B01G182200.1	Wheat	cytosol	73.76	75.46
TraesCS7B01G200600.1	Wheat	cytosol	72.85	74.54
TraesCS1B01G426300.1	Wheat	cytosol	71.04	72.69
VIT_19s0014g01160.t01	Wine grape	extracellular	82.81	72.62
TraesCS3B01G396200.1	Wheat	cytosol, golgi	65.16	66.67
TraesCS5B01G498600.1	Wheat	cytosol, plastid	63.8	65.58
TraesCS5B01G530800.1	Wheat	cytosol	66.06	65.47
CDX81790	Canola	plastid	78.28	64.79
TraesCS1B01G018900.1	Wheat	cytosol	64.25	63.68
TraesCS1B01G150900.1	Wheat	cytosol	60.63	61.75
TraesCS1B01G152100.1	Wheat	cytosol	57.92	59.26
TraesCS5B01G171900.1	Wheat	cytosol	57.47	56.19
TraesCS7B01G287900.1	Wheat	cytosol	52.49	51.79
TraesCS5B01G316300.1	Wheat	cytosol	51.58	45.97
TraesCS3B01G272300.1	Wheat	cytosol	66.52	42.49

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0042538	GO:GO:0060627
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3B01G324300	EnsemblPlants:TraesCS3B01G324300.1	TIGR:cd01868	:

Description

No Description!

Coordinates

chr3B:+:525228190..525235775

Molecular Weight (calculated)

24062.0 Da

IEP (calculated)

4.836

GRAVY (calculated)

-0.295

Length

221 amino acids

Sequence
(BLAST)

001: MAGSGGGAYR AEDDYDYLFK AVIIGDSGVG KSNLLSRFTK NEFCLESKST IGVEFATRSL QVDGKVVKAQ IWDTAGQERY RAITSAYYRG AVGALLVYDV
101: TRRATFDNVA RWLKELRDHT DSSIVVMLVG NKSDLRHLVA VSTEDGQEYA EAESLYFMET SALDATNVDN AFSEVLTQIY RIASRKTVDA GDDGSSAPSK
201: GENINVKDDV SSLKRAGCCS S

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.