Factsheet for TraesCS5B01G530800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2A01G445100.1
TraesCS2B01G318300.2
TraesCS2B01G466100.1
TraesCS2D01G301100.1
TraesCS2D01G444000.1
TraesCS4A01G354500.1
TraesCS4A01G458600.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1
TraesCS6A01G265600.1
TraesCS6B01G292900.1
TraesCS6D01G249000.1
TraesCS7A01G030900.2
TraesCS7D01G027100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT1G09630.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT1G09630.1	TraesCS5D01G517600.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2A01G445100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2B01G466100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2D01G444000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS4A01G458600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6A01G265600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6B01G292900.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6D01G249000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS7A01G030900.2	AT4G17720.1	21798944
AT1G09630.1	TraesCS7D01G027100.1	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G343500.1	Wheat	cytosol	98.65	97.78
TraesCS5D01G529500.1	Wheat	cytosol	98.21	97.33
Os03t0843100-01	Rice	cytosol	82.06	82.06
VIT_12s0035g01140.t01	Wine grape	extracellular	72.65	75.35
KRH06049	Soybean	endoplasmic reticulum	72.65	75.0
KRH26288	Soybean	endoplasmic reticulum	72.65	74.65
PGSC0003DMT400064102	Potato	cytosol	71.3	74.3
Solyc01g103380.2.1	Tomato	nucleus	71.3	74.3
CDY50888	Canola	cytosol	72.2	74.19
CDX93495	Canola	cytosol	71.75	73.73
Bra020006.1-P	Field mustard	cytosol	71.75	73.73
AT1G09630.1	Thale cress	cytosol	71.3	73.27
GSMUA_Achr6P28910_001	Banana	cytosol	70.85	72.81
GSMUA_Achr2P05630_001	Banana	cytosol	69.96	72.56
Solyc10g045550.1.1	Tomato	nucleus	69.51	72.09
GSMUA_Achr6P18430_001	Banana	cytosol	72.65	72.0
EER90540	Sorghum	cytosol	73.54	69.49
Zm00001d034803_P001	Maize	cytosol	72.2	68.8
Zm00001d034802_P001	Maize	cytosol	72.2	68.8
TraesCS3B01G396200.1	Wheat	cytosol, golgi	66.37	68.52
TraesCS1B01G018900.1	Wheat	cytosol	68.16	68.16
TraesCS5B01G182200.1	Wheat	cytosol	65.92	68.06
HORVU5Hr1G120210.4	Barley	plastid	96.41	68.04
TraesCS5B01G498600.1	Wheat	cytosol, plastid	64.13	66.51
TraesCS7B01G200600.1	Wheat	cytosol	64.13	66.2
TraesCS3B01G324300.1	Wheat	cytosol, golgi	65.47	66.06
TraesCS7B01G273300.1	Wheat	plastid	64.13	65.9
TraesCS1B01G426300.1	Wheat	cytosol	63.23	65.28
TraesCS1B01G150900.1	Wheat	cytosol	62.33	64.06
PGSC0003DMT400045950	Potato	cytosol	69.06	60.39
TraesCS1B01G152100.1	Wheat	cytosol	57.85	59.72
TraesCS5B01G171900.1	Wheat	cytosol	58.3	57.52
TraesCS7B01G287900.1	Wheat	cytosol	52.02	51.79
TraesCS5B01G316300.1	Wheat	cytosol	52.02	46.77
TraesCS3B01G272300.1	Wheat	cytosol	64.13	41.33

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF564	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5B01G530800
EnsemblPlants:TraesCS5B01G530800.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:689223424..689225258

Molecular Weight (calculated)

24128.4 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.163

Length

223 amino acids

Sequence
(BLAST)

001: MAARRAAAWE QGGDEYDYLF KVVLIGDSGV GKSNLLSRFT KNTFSLDSKS TIGVEFATRT TQVEGKTIKA QIWDTAGQER YRAITSAYYR GAVGALLVYD
101: VTKAATFDNV KRWLKELRDH ADSNIVIMLI GNKTDLRHLR SVATDKAAGF AEWEGLSFIE TSALDATNVD KAFQTVLAEI YRVVGKKALS STDDSGAGAV
201: GEGQSILVSG GEPTSVSSRC CSF

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.