Factsheet for PGSC0003DMT400045950

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400038377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT1G09630.1	PGSC0003DMT400038377	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g045550.1.1	Tomato	nucleus	83.53	99.07
PGSC0003DMT400064102	Potato	cytosol	76.08	90.65
Bra020006.1-P	Field mustard	cytosol	73.33	86.18
CDY50888	Canola	cytosol	73.33	86.18
AT1G09630.1	Thale cress	cytosol	73.33	86.18
KRH26288	Soybean	endoplasmic reticulum	73.33	86.18
CDX93495	Canola	cytosol	72.94	85.71
KRH06049	Soybean	endoplasmic reticulum	72.55	85.65
GSMUA_Achr2P05630_001	Banana	cytosol	71.76	85.12
GSMUA_Achr6P28910_001	Banana	cytosol	71.76	84.33
OQU77196	Sorghum	cytosol	67.06	77.73
GSMUA_Achr6P18430_001	Banana	cytosol	67.84	76.89
Os05t0105100-01	Rice	golgi, plasma membrane	65.49	75.91
HORVU1Hr1G001920.2	Barley	cytosol	66.67	75.56
TraesCS1B01G018900.1	Wheat	cytosol	65.1	74.44
TraesCS1D01G013300.1	Wheat	cytosol	64.71	73.99
TraesCS1A01G015400.1	Wheat	cytosol	64.31	73.54
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	63.14	72.2
Os03t0843100-01	Rice	cytosol	62.75	71.75
PGSC0003DMT400053686	Potato	cytosol	60.39	71.3
PGSC0003DMT400078200	Potato	cytosol	60.0	71.16
PGSC0003DMT400069776	Potato	cytosol	60.0	71.16
EER98344	Sorghum	cytosol	61.96	70.85
PGSC0003DMT400055848	Potato	cytosol	58.82	70.09
TraesCS5B01G530800.1	Wheat	cytosol	60.39	69.06
TraesCS4A01G343500.1	Wheat	cytosol	60.39	68.44
PGSC0003DMT400024319	Potato	cytosol	58.04	68.2
TraesCS5D01G529500.1	Wheat	cytosol	60.0	68.0
PGSC0003DMT400020208	Potato	cytosol	57.25	67.28
PGSC0003DMT400033395	Potato	cytosol	55.69	65.74
PGSC0003DMT400058784	Potato	cytosol	55.29	65.58
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	55.69	65.44
PGSC0003DMT400073077	Potato	cytosol	55.29	64.98
Zm00001d034802_P001	Maize	cytosol	55.29	60.26
PGSC0003DMT400065028	Potato	cytosol	52.94	59.73
Zm00001d034803_P001	Maize	cytosol	54.51	59.4
EER90540	Sorghum	cytosol	54.12	58.47
PGSC0003DMT400041813	Potato	cytosol	50.98	58.04
PGSC0003DMT400033664	Potato	cytosol	50.98	58.04
PGSC0003DMT400060649	Potato	cytosol	50.2	57.66
PGSC0003DMT400021064	Potato	cytosol	50.59	57.08
PGSC0003DMT400000356	Potato	cytosol	47.45	50.21
HORVU5Hr1G120210.4	Barley	plastid	61.18	49.37

Protein Annotations

EntrezGene:102604566	MapMan:35.1	GO:GO:0000166	GO:GO:0000911	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0007049	GO:GO:0008150
GO:GO:0009504	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	UniProt:M1BIF3	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400017824	PGSC:PGSC0003DMG400017824	EnsemblPlants:PGSC0003DMT400045950	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002957040	:

Description

Ras GTPase; Sigma-54 factor, interaction region [Source:PGSC_GENE;Acc:PGSC0003DMG400017824]

Coordinates

chr10:+:15812024..15816975

Molecular Weight (calculated)

28899.6 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.252

Length

255 amino acids

Sequence
(BLAST)

001: MARRADEEYD YLFKIVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLKVLPLK VEWWMWTDLG WCGEMRFRKI EEEDVVVVGR QCLDYVEGRI
101: IKSQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPISF ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEREGLS FIETSALEAT
201: NVEKAFQMNL SEIYRIISKK SLSSENPAPA NIKEGKTLVV GAEEINTKKA CCSAS

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.