Factsheet for PGSC0003DMT400065028

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g086850.2.1	Tomato	cytosol	97.79	98.22
PGSC0003DMT400033664	Potato	cytosol	75.22	75.89
PGSC0003DMT400021064	Potato	cytosol	75.66	75.66
PGSC0003DMT400060649	Potato	cytosol	73.89	75.23
PGSC0003DMT400041813	Potato	cytosol	73.45	74.11
PGSC0003DMT400024319	Potato	cytosol	60.18	62.67
PGSC0003DMT400058784	Potato	cytosol	59.29	62.33
PGSC0003DMT400064102	Potato	cytosol	58.85	62.15
PGSC0003DMT400033395	Potato	cytosol	58.85	61.57
PGSC0003DMT400069776	Potato	cytosol	57.96	60.93
PGSC0003DMT400055848	Potato	cytosol	57.52	60.75
PGSC0003DMT400053686	Potato	cytosol	57.96	60.65
PGSC0003DMT400078200	Potato	cytosol	57.08	60.0
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	57.52	59.91
PGSC0003DMT400073077	Potato	cytosol	57.52	59.91
PGSC0003DMT400020208	Potato	cytosol	57.52	59.91
PGSC0003DMT400000356	Potato	cytosol	61.5	57.68
PGSC0003DMT400045950	Potato	cytosol	59.73	52.94

Protein Annotations

EntrezGene:102583392	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CDA3	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400025262	PGSC:PGSC0003DMG400025262	EnsemblPlants:PGSC0003DMT400065028	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002949368
RefSeq:XP_006366509.1	SEG:seg	:	:	:	:

Description

Small molecular weight G-protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025262]

Coordinates

chr1:+:66271531..66278601

Molecular Weight (calculated)

24906.6 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.169

Length

226 amino acids

Sequence
(BLAST)

001: MSKLYGGDFN QKIDYVFKAV LIGDSAVGKS QLLARFSRNE FSLDSKATIG VEFQTRTLEI DHKTIKAQIW DTAGQERYRA VTSAYYRGAV GAMLVYDITK
101: RQSFDHIARW LEELRGHADK NIVIMLVGNK TDLGSLRAVP TEDAKEFAEK ENLFFIETSA LEATNVDTAF VNVLTEIYRV VSKKSLVANE AESTAGSSAL
201: LRGKEIVVPG QGLVPSGSSY SCCRSS

Best Arabidopsis Sequence Match ( AT5G47960.1 )
(BLAST)

001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS

Arabidopsis Description

RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.