Factsheet for PGSC0003DMT400073077

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003853

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18800.1	PGSC0003DMT400003853	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g072180.2.1	Tomato	cytosol	100.0	100.0
AT4G18800.1	Thale cress	cytosol	88.48	89.72
CDX99430	Canola	cytosol	87.1	88.32
AT5G45750.1	Thale cress	cytosol	87.1	87.5
CDX87774	Canola	cytosol	85.71	86.11
CDY64916	Canola	cytosol	84.79	85.58
CDY62557	Canola	cytosol	84.79	85.58
PGSC0003DMT400024319	Potato	cytosol	80.65	80.65
PGSC0003DMT400020208	Potato	cytosol	79.72	79.72
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	78.8	78.8
PGSC0003DMT400033395	Potato	cytosol	76.04	76.39
PGSC0003DMT400058784	Potato	cytosol	75.12	75.81
PGSC0003DMT400064102	Potato	cytosol	66.36	67.29
PGSC0003DMT400053686	Potato	cytosol	64.98	65.28
PGSC0003DMT400069776	Potato	cytosol	64.06	64.65
PGSC0003DMT400078200	Potato	cytosol	64.06	64.65
PGSC0003DMT400055848	Potato	cytosol	63.13	64.02
PGSC0003DMT400041813	Potato	cytosol	60.37	58.48
PGSC0003DMT400065028	Potato	cytosol	59.91	57.52
PGSC0003DMT400060649	Potato	cytosol	57.6	56.31
PGSC0003DMT400033664	Potato	cytosol	57.6	55.8
PGSC0003DMT400021064	Potato	cytosol	58.06	55.75
PGSC0003DMT400045950	Potato	cytosol	64.98	55.29
PGSC0003DMT400000356	Potato	cytosol	56.68	51.04

Protein Annotations

EntrezGene:102599414	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CRH4	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400028422	PGSC:PGSC0003DMG400028422	EnsemblPlants:PGSC0003DMT400073077	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001EE9997	RefSeq:XP_006358110.1

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028422]

Coordinates

chr2:+:31610331..31616514

Molecular Weight (calculated)

24088.3 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.375

Length

217 amino acids

Sequence
(BLAST)

001: MAGYRAEDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATKSLTVDSK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLKE LRDHTDPNIV VMLVGNKSDL RHLVAVSTED GKSFAEKESL YYMETSALES TNVENAFAEV LTQIYHVVSR KAMENGENGN GNVPSKGEKI
201: DIGKEVSDVK KAGCCSS

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.