Factsheet for PGSC0003DMT400033664

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g064020.2.1	Tomato	cytosol	94.64	94.64
PGSC0003DMT400021064	Potato	cytosol	85.71	84.96
Bra001439.1-P	Field mustard	cytosol	81.25	82.35
CDY00758	Canola	cytosol	81.25	82.35
CDX73833	Canola	cytosol	81.25	82.35
Bra038701.1-P	Field mustard	cytosol	81.25	81.98
CDY08447	Canola	cytosol	81.25	81.98
CDY42133	Canola	cytosol	81.25	81.98
CDY50568	Canola	cytosol	81.25	81.98
CDY52622	Canola	cytosol	81.25	81.98
AT3G12160.1	Thale cress	cytosol	81.25	81.98
KRH75359	Soybean	endoplasmic reticulum	80.8	81.17
VIT_08s0007g07800.t01	Wine grape	cytosol	79.91	80.27
KRG88929	Soybean	cytosol	79.46	79.82
KRH33003	Soybean	cytosol	78.57	78.22
KRH71891	Soybean	cytosol	76.79	77.13
PGSC0003DMT400065028	Potato	cytosol	75.89	75.22
PGSC0003DMT400060649	Potato	cytosol	69.2	69.82
Bra034771.1-P	Field mustard	cytosol	81.25	69.2
PGSC0003DMT400041813	Potato	cytosol	68.75	68.75
PGSC0003DMT400069776	Potato	cytosol	58.93	61.4
PGSC0003DMT400064102	Potato	cytosol	58.48	61.22
PGSC0003DMT400055848	Potato	cytosol	58.04	60.75
PGSC0003DMT400078200	Potato	cytosol	58.04	60.47
PGSC0003DMT400058784	Potato	cytosol	57.59	60.0
PGSC0003DMT400053686	Potato	cytosol	57.59	59.72
PGSC0003DMT400024319	Potato	cytosol	57.59	59.45
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	56.25	58.06
PGSC0003DMT400033395	Potato	cytosol	55.8	57.87
PGSC0003DMT400073077	Potato	cytosol	55.8	57.6
PGSC0003DMT400020208	Potato	cytosol	55.8	57.6
PGSC0003DMT400000356	Potato	cytosol	60.27	56.02
PGSC0003DMT400045950	Potato	cytosol	58.04	50.98

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AZG4	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400012930	PGSC:PGSC0003DMG400012930	EnsemblPlants:PGSC0003DMT400033664	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296258F	:

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012930]

Coordinates

chr3:-:19820869..19822576

Molecular Weight (calculated)

24965.8 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.231

Length

224 amino acids

Sequence
(BLAST)

001: MSNLYGDYNQ KIDYVFKIVL IGDSAVGKSQ LLARFGRNEF NLDSKATIGV EFQTKTLIID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDLTKR
101: QSFDHMARWL EELRGHADKN IVIMLIGNKC DLGSLRAVPI EDAQEFVERE NLFFMETSAL ESTNVETTFM SILKEIYQIV GKKTLTADEG AEYAKSQSLK
201: GTRIILPGQE SDSAGRGAGC CISS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.