CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88929	Soybean	cytosol	96.41	96.41
KRH33003	Soybean	cytosol	84.75	84.0
KRH71891	Soybean	cytosol	81.17	81.17
PGSC0003DMT400033664	Potato	cytosol	81.17	80.8
Solyc10g079030.1.1	Tomato	plastid	81.17	80.09
VIT_08s0007g07800.t01	Wine grape	cytosol	79.82	79.82
Solyc03g064020.2.1	Tomato	cytosol	79.37	79.02
PGSC0003DMT400021064	Potato	cytosol	79.82	78.76
KRG97554	Soybean	cytosol, endoplasmic reticulum	71.3	71.3
KRH31313	Soybean	endoplasmic reticulum	69.96	69.96
KRH59301	Soybean	cytosol, endoplasmic reticulum	71.75	69.87
KRH43151	Soybean	cytosol, endoplasmic reticulum	70.4	66.24
KRH24729	Soybean	endoplasmic reticulum, nucleus	58.74	60.65
KRH29738	Soybean	endoplasmic reticulum	58.3	60.19
KRH50137	Soybean	cytosol, mitochondrion	58.3	59.91
KRH15036	Soybean	cytosol, nucleus	57.85	59.72
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	57.85	59.45
KRH26288	Soybean	endoplasmic reticulum	57.85	59.45
KRH20359	Soybean	cytosol, endoplasmic reticulum	57.85	59.45
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	57.4	58.99
KRH06049	Soybean	endoplasmic reticulum	56.95	58.8
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.4	58.72
KRH22259	Soybean	cytosol, nucleus	57.4	58.72
KRH27364	Soybean	endoplasmic reticulum	56.95	58.53
KRH30863	Soybean	cytosol	56.95	58.53
KRH25681	Soybean	cytosol	56.95	58.53
KRH55839	Soybean	endoplasmic reticulum	56.95	58.53
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.5	58.06
KRH68938	Soybean	cytosol	61.44	58.05
KRG97215	Soybean	cytosol	60.99	57.63
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	56.05	57.6
KRH06418	Soybean	cytosol	62.33	56.97
KRH47850	Soybean	cytosol	61.88	56.33
KRH22324	Soybean	cytosol, endoplasmic reticulum	53.36	54.59
KRH27001	Soybean	cytosol, endoplasmic reticulum	52.91	54.13
KRH27503	Soybean	cytosol	54.26	53.07
KRH36458	Soybean	cytosol	53.81	52.63

Protein Annotations

EntrezGene:100806396	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02000330	EnsemblPlantsGene:GLYMA_01G080300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787
UniProt:K7K2L5	EnsemblPlants:KRH75359	ProteinID:KRH75359	ProteinID:KRH75359.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00023370B0	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:21959514..21961696

Molecular Weight (calculated)

25010.9 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.222

Length

223 amino acids

Sequence
(BLAST)

001: MSNLYGDYHQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SLDSKATIGV EFQTKTLIID NKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMVRWL EELRGHADQN IVIMLIGNKC DLGSLRAVPM EDAEEVAQRE NLFFMETSAL ESTNVETCFL TILTEIYRIH AKKSLTASDD DNWGSGLLKG
201: SRIIVPNQEI DNGGKKGGCC FAS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.