CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97554	Soybean	cytosol, endoplasmic reticulum	95.96	95.96
VIT_07s0191g00030.t01	Wine grape	cytosol	90.13	88.94
KRH59301	Soybean	cytosol, endoplasmic reticulum	91.03	88.65
PGSC0003DMT400060649	Potato	cytosol	87.89	88.29
Solyc11g010100.1.1	Tomato	cytosol	88.34	87.95
PGSC0003DMT400041813	Potato	cytosol	88.34	87.95
Solyc04g012180.2.1	Tomato	cytosol, unclear	87.44	87.84
Zm00001d014278_P001	Maize	extracellular, plasma membrane	81.61	83.87
OQU91938	Sorghum	cytosol	80.72	82.95
Os10t0377400-01	Rice	cytosol	79.82	82.41
GSMUA_Achr3P01690_001	Banana	cytosol	80.72	82.19
TraesCS1D01G136900.1	Wheat	cytosol	78.92	81.48
TraesCS1B01G152100.1	Wheat	cytosol	78.92	81.48
TraesCS1A01G131500.2	Wheat	cytosol	78.92	81.48
KRH43151	Soybean	cytosol, endoplasmic reticulum	86.55	81.43
GSMUA_Achr8P18090_001	Banana	cytosol	79.37	81.19
GSMUA_Achr3P21290_001	Banana	cytosol	79.37	80.82
Zm00001d048222_P001	Maize	extracellular, plasma membrane	77.13	79.26
EER92725	Sorghum	cytosol	77.13	79.26
Zm00001d028002_P001	Maize	mitochondrion	76.68	78.8
KRH75359	Soybean	endoplasmic reticulum	69.96	69.96
KRG88929	Soybean	cytosol	69.51	69.51
KRH33003	Soybean	cytosol	69.51	68.89
KRH71891	Soybean	cytosol	67.26	67.26
KRH15036	Soybean	cytosol, nucleus	61.44	63.43
HORVU1Hr1G034400.4	Barley	plasma membrane	77.58	63.37
CDX69367	Canola	cytosol	52.02	63.04
KRH24729	Soybean	endoplasmic reticulum, nucleus	60.54	62.5
KRH29738	Soybean	endoplasmic reticulum	60.54	62.5
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	60.54	62.21
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	59.64	61.29
KRH26288	Soybean	endoplasmic reticulum	58.74	60.37
KRH06418	Soybean	cytosol	65.92	60.25
KRH06049	Soybean	endoplasmic reticulum	58.3	60.19
KRH47850	Soybean	cytosol	65.92	60.0
KRH22259	Soybean	cytosol, nucleus	58.3	59.63
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.3	59.63
KRH68938	Soybean	cytosol	62.78	59.32
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.4	58.99
KRH50137	Soybean	cytosol, mitochondrion	57.4	58.99
KRH27364	Soybean	endoplasmic reticulum	57.4	58.99
KRH20359	Soybean	cytosol, endoplasmic reticulum	56.5	58.06
KRG97215	Soybean	cytosol	61.44	58.05
KRH55839	Soybean	endoplasmic reticulum	55.61	57.14
KRH25681	Soybean	cytosol	55.61	57.14
KRH30863	Soybean	cytosol	55.16	56.68
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	54.71	56.22
KRH27503	Soybean	cytosol	56.5	55.26
KRH27001	Soybean	cytosol, endoplasmic reticulum	53.36	54.59
KRH36458	Soybean	cytosol	55.61	54.39
KRH22324	Soybean	cytosol, endoplasmic reticulum	52.91	54.13

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02007137	EnsemblPlantsGene:GLYMA_11G241300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:I1LNJ6
EnsemblPlants:KRH31313	ProteinID:KRH31313	ProteinID:KRH31313.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00023CBE78	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:33552339..33555298

Molecular Weight (calculated)

24610.3 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.267

Length

223 amino acids

Sequence
(BLAST)

001: MASGGGYGDA NQKVDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRQSFDHIPR WLEELRNHAD KNIVIILIGN KSDLENQRQV PTEDAKEFAE KEGLFFLETS ALEATNVETA FMTVLTEIFN IVNKKNLAAG DNQGNGNAAS
201: LSGKQIIVPG TAQEIPKRSM CCQ

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.