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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69836 Canola cytosol 79.89 65.62
CDY18682 Canola cytosol 68.48 56.0
CDX81274 Canola cytosol 67.93 55.07
VIT_07s0191g00030.t01 Wine grape cytosol 66.3 53.98
CDX96994 Canola cytosol 65.22 53.81
CDX69843 Canola cytosol 64.67 53.36
Solyc04g012180.2.1 Tomato cytosol, unclear 64.13 53.15
KRG97554 Soybean cytosol, endoplasmic reticulum 64.13 52.91
Os10t0377400-01 Rice cytosol 61.96 52.78
PGSC0003DMT400060649 Potato cytosol 63.59 52.7
PGSC0003DMT400041813 Potato cytosol 64.13 52.68
Solyc11g010100.1.1 Tomato cytosol 63.59 52.23
KRH31313 Soybean endoplasmic reticulum 63.04 52.02
Zm00001d014278_P001 Maize extracellular, plasma membrane 60.87 51.61
TraesCS1D01G136900.1 Wheat cytosol 60.33 51.39
TraesCS1A01G131500.2 Wheat cytosol 60.33 51.39
TraesCS1B01G152100.1 Wheat cytosol 60.33 51.39
OQU91938 Sorghum cytosol 60.33 51.15
GSMUA_Achr3P01690_001 Banana cytosol 59.24 49.77
EER92725 Sorghum cytosol 58.7 49.77
Zm00001d028002_P001 Maize mitochondrion 58.7 49.77
GSMUA_Achr8P18090_001 Banana cytosol 58.7 49.54
GSMUA_Achr3P21290_001 Banana cytosol 58.7 49.32
Zm00001d048222_P001 Maize extracellular, plasma membrane 58.15 49.31
CDY54519 Canola cytosol 53.8 44.39
CDX86332 Canola cytosol 53.26 43.95
CDX73833 Canola cytosol 52.17 43.44
CDY00758 Canola cytosol 52.17 43.44
CDY50568 Canola cytosol 52.17 43.24
CDY52622 Canola cytosol 52.17 43.24
CDY08447 Canola cytosol 51.63 42.79
CDY42133 Canola cytosol 51.63 42.79
CDY50888 Canola cytosol 47.28 40.09
CDY33014 Canola cytosol 47.28 40.09
HORVU1Hr1G034400.4 Barley plasma membrane 59.24 39.93
CDX93495 Canola cytosol 46.74 39.63
CDX90160 Canola cytosol 46.2 39.53
CDY09919 Canola cytosol 45.65 39.25
CDY06256 Canola cytosol 45.65 39.25
CDY32661 Canola cytosol 46.2 39.17
CDY02867 Canola cytosol 46.2 39.17
CDY71720 Canola cytosol 46.2 39.17
CDY64916 Canola cytosol 45.65 39.07
CDY62557 Canola cytosol 45.65 39.07
CDY35757 Canola cytosol 46.2 38.99
CDY20100 Canola cytosol 46.2 38.99
CDY06703 Canola cytosol 45.65 38.89
CDX99430 Canola cytosol 45.11 38.78
CDY15659 Canola cytosol 45.65 38.53
CDX94631 Canola cytosol 45.65 38.53
CDY30818 Canola cytosol 45.65 38.53
CDY34094 Canola cytosol 45.65 38.53
CDX82451 Canola cytosol 45.11 38.07
CDX75804 Canola cytosol 44.57 37.61
CDX96799 Canola cytosol 44.02 37.5
CDY40023 Canola cytosol 44.02 37.5
CDX87774 Canola cytosol 44.02 37.5
CDY35128 Canola cytosol 43.48 37.04
CDY01540 Canola cytosol 43.48 36.87
CDY55638 Canola cytosol 43.48 36.87
CDX76522 Canola cytosol 43.48 36.87
CDX90017 Canola cytosol 47.28 36.71
CDY15192 Canola cytosol 47.28 36.71
CDY09976 Canola cytosol 44.02 36.32
CDY06210 Canola cytosol 44.02 36.32
CDX69369 Canola cytosol 76.63 34.56
CDX79548 Canola cytosol 36.96 34.52
CDX86101 Canola cytosol 47.28 33.98
CDX80299 Canola cytosol 47.28 33.72
CDY60884 Canola cytosol 40.22 33.18
CDX81790 Canola plastid 44.02 30.34
CDX99094 Canola cytosol 47.28 30.31
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078BYF4EnsemblPlants:CDX69367ProteinID:CDX69367ProteinID:CDX69367.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00131219001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF350SMART:SM00173SMART:SM00175SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0004EED8E8:::
Description
BnaC01g00860D
Coordinates
chrLK031789:-:4397518..4399298
Molecular Weight (calculated)
20380.0 Da
IEP (calculated)
5.072
GRAVY (calculated)
-0.343
Length
184 amino acids
Sequence
(BLAST)
001: MKRSCFFFDF LLPSHSQITE TSPDQTSQKT IKLTDIEYRA VTSAYYRGAV GAMLVYDITK RETFDHIPRW LEELRAHADK NIVIILIGNK SDLEDQRAIS
101: TEDDAKEFAE KEGLFFLETS ALNATNVENS FNTLMSEIFN TVNKKSLSSV GESNNPGSLA GKKLVIPGPG QEVPAKTSTC CSSA
Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)
001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS
Arabidopsis Description
RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.