Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G136900.1 | Wheat | cytosol | 77.66 | 98.15 |
| TraesCS1B01G152100.1 | Wheat | cytosol | 77.66 | 98.15 |
| TraesCS1A01G131500.2 | Wheat | cytosol | 77.66 | 98.15 |
| Os10t0377400-01 | Rice | cytosol | 74.36 | 93.98 |
| Zm00001d014278_P001 | Maize | extracellular, plasma membrane | 73.63 | 92.63 |
| OQU91938 | Sorghum | cytosol | 73.63 | 92.63 |
| GSMUA_Achr3P01690_001 | Banana | cytosol | 65.2 | 81.28 |
| GSMUA_Achr8P18090_001 | Banana | cytosol | 64.84 | 81.19 |
| GSMUA_Achr3P21290_001 | Banana | cytosol | 63.74 | 79.45 |
| Solyc11g010100.1.1 | Tomato | cytosol | 64.1 | 78.12 |
| PGSC0003DMT400041813 | Potato | cytosol | 64.1 | 78.12 |
| KRH31313 | Soybean | endoplasmic reticulum | 63.37 | 77.58 |
| KRG97554 | Soybean | cytosol, endoplasmic reticulum | 63.0 | 77.13 |
| VIT_07s0191g00030.t01 | Wine grape | cytosol | 63.74 | 76.99 |
| PGSC0003DMT400060649 | Potato | cytosol | 62.27 | 76.58 |
| Solyc04g012180.2.1 | Tomato | cytosol, unclear | 62.27 | 76.58 |
| CDX69843 | Canola | cytosol | 61.9 | 75.78 |
| CDX96994 | Canola | cytosol | 61.54 | 75.34 |
| Bra009040.1-P | Field mustard | cytosol | 61.54 | 75.34 |
| AT5G65270.1 | Thale cress | cytosol | 61.54 | 74.34 |
| Bra037810.1-P | Field mustard | cytosol | 61.17 | 74.22 |
| CDY18682 | Canola | cytosol | 61.17 | 74.22 |
| CDX81274 | Canola | cytosol | 60.81 | 73.13 |
| KRH59301 | Soybean | cytosol, endoplasmic reticulum | 61.17 | 72.93 |
| Bra011818.1-P | Field mustard | cytosol | 58.97 | 72.2 |
| CDY69836 | Canola | cytosol | 58.97 | 71.88 |
| AT4G39990.1 | Thale cress | cytosol | 57.51 | 70.09 |
| KRH43151 | Soybean | cytosol, endoplasmic reticulum | 58.61 | 67.51 |
| HORVU5Hr1G114250.1 | Barley | cytosol, plasma membrane | 47.99 | 60.93 |
| CDX69367 | Canola | cytosol | 39.93 | 59.24 |
| HORVU1Hr1G033390.2 | Barley | cytosol | 46.89 | 58.99 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 46.52 | 58.8 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 45.79 | 55.56 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 42.12 | 52.04 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 43.22 | 51.75 |
| HORVU7Hr1G089120.1 | Barley | cytosol | 45.42 | 50.2 |
| HORVU3Hr1G071740.1 | Barley | plastid | 46.15 | 44.06 |
| HORVU3Hr1G085710.1 | Barley | cytosol, plastid | 49.08 | 42.68 |
| HORVU5Hr1G120210.4 | Barley | plastid | 46.15 | 39.87 |
| CDX69369 | Canola | cytosol | 57.51 | 38.48 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | UniProt:A0A287F3Q2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:HORVU1Hr1G034400 | EnsemblPlants:HORVU1Hr1G034400.4 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF647 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000B461EAC | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr1H:-:220554369..220568586
Molecular Weight (calculated)
30182.2 Da
IEP (calculated)
10.346
GRAVY (calculated)
-0.354
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: RAPAFPPVSL ASPSLRLKIK TPNSDTLRPR ALLHDPHASL GHSSGRRQRR RSARAKTMSS VEKVDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI
101: GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA LGALLVYDIT KRQSFDHIPR WLEELRGHAD KNIIIMLVGN KSDLEDERAV STEDAKEFAE
201: KENLFFLETS ALQATNVESA FQTVLSEIFK IHSKKNIVTD PKANGAAPPL AGKKVLVPGP AQEIPKSKCC GSM
101: GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA LGALLVYDIT KRQSFDHIPR WLEELRGHAD KNIIIMLVGN KSDLEDERAV STEDAKEFAE
201: KENLFFLETS ALQATNVESA FQTVLSEIFK IHSKKNIVTD PKANGAAPPL AGKKVLVPGP AQEIPKSKCC GSM
001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
Arabidopsis Description
RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.