Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G485100.1 | Wheat | cytosol, golgi | 96.74 | 96.74 |
| TraesCS5D01G498600.1 | Wheat | cytosol | 96.28 | 96.28 |
| TraesCS5B01G498600.1 | Wheat | cytosol, plastid | 96.28 | 96.28 |
| Os03t0823700-01 | Rice | plasma membrane | 96.28 | 96.28 |
| KXG37238 | Sorghum | cytosol | 96.28 | 96.28 |
| Zm00001d034675_P002 | Maize | cytosol | 94.88 | 94.88 |
| GSMUA_Achr6P14930_001 | Banana | cytosol | 70.23 | 88.3 |
| Solyc03g079900.2.1 | Tomato | cytosol | 84.19 | 84.19 |
| PGSC0003DMT400055848 | Potato | cytosol | 83.72 | 84.11 |
| PGSC0003DMT400069776 | Potato | cytosol | 83.72 | 83.72 |
| KRH15036 | Soybean | cytosol, nucleus | 83.72 | 83.33 |
| Solyc05g052900.2.1 | Tomato | cytosol | 83.26 | 83.26 |
| KRG97821 | Soybean | cytosol, endoplasmic reticulum, nucleus | 83.72 | 82.95 |
| KRH73103 | Soybean | cytosol, endoplasmic reticulum, nucleus | 83.26 | 82.49 |
| HORVU1Hr1G033390.2 | Barley | cytosol | 76.74 | 76.04 |
| VIT_13s0019g02470.t01 | Wine grape | cytosol | 85.12 | 75.93 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 73.02 | 69.78 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 66.98 | 66.67 |
| HORVU7Hr1G089120.1 | Barley | cytosol | 67.91 | 59.11 |
| HORVU3Hr1G085710.1 | Barley | cytosol, plastid | 86.05 | 58.92 |
| HORVU3Hr1G071740.1 | Barley | plastid | 66.05 | 49.65 |
| HORVU1Hr1G034400.4 | Barley | plasma membrane | 60.93 | 47.99 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 50.23 | 47.37 |
| HORVU5Hr1G120210.4 | Barley | plastid | 68.84 | 46.84 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 47.44 | 46.15 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EMBL:AK370127 | EMBL:AK370467 | UniProt:F2E1V6 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| EnsemblPlantsGene:HORVU5Hr1G114250 | EnsemblPlants:HORVU5Hr1G114250.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF495 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00019AA8B0 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E1V6]
Coordinates
chrchr5H:-:643433504..643435944
Molecular Weight (calculated)
23680.1 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.312
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQIEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQTF
101: ENINRWLREL RDHADSNIVI MMVGNKSDLN HLRSVPEEDG QALAEKEGLS FLETSALEAL NVEKAFQTIL SDIHQIISKK ALAAQEAAGS GPPTQGTTIN
201: VADSSGNTKK GCCST
101: ENINRWLREL RDHADSNIVI MMVGNKSDLN HLRSVPEEDG QALAEKEGLS FLETSALEAL NVEKAFQTIL SDIHQIISKK ALAAQEAAGS GPPTQGTTIN
201: VADSSGNTKK GCCST
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.