CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034675_P002	Maize	cytosol	98.14	98.14
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	96.28	96.28
Os03t0823700-01	Rice	plasma membrane	95.81	95.81
TraesCS5A01G485100.1	Wheat	cytosol, golgi	93.49	93.49
TraesCS5D01G498600.1	Wheat	cytosol	93.02	93.02
TraesCS5B01G498600.1	Wheat	cytosol, plastid	93.02	93.02
GSMUA_Achr6P14930_001	Banana	cytosol	69.77	87.72
KRH15036	Soybean	cytosol, nucleus	83.72	83.33
Solyc05g052900.2.1	Tomato	cytosol	82.79	82.79
Solyc03g079900.2.1	Tomato	cytosol	82.79	82.79
PGSC0003DMT400055848	Potato	cytosol	82.33	82.71
PGSC0003DMT400069776	Potato	cytosol	82.33	82.33
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	82.79	82.03
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	82.33	81.57
VIT_13s0019g02470.t01	Wine grape	cytosol	84.65	75.52
EES17935	Sorghum	cytosol	75.81	75.12
OQU77196	Sorghum	cytosol	71.63	70.0
EER98344	Sorghum	cytosol	71.63	69.06
EER89913	Sorghum	cytosol	69.3	68.66
EES19950	Sorghum	cytosol	66.98	66.67
EES19812	Sorghum	cytosol	67.91	66.36
OQU89311	Sorghum	cytosol	66.51	66.2
OQU91938	Sorghum	cytosol	63.26	62.67
OQU87300	Sorghum	cytosol	62.33	61.19
EER92725	Sorghum	cytosol	61.4	60.83
EER90540	Sorghum	cytosol	65.12	59.32
EER96479	Sorghum	cytosol	61.4	58.41
EER90389	Sorghum	cytosol	46.98	48.33
EER97073	Sorghum	cytosol	52.56	44.14

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A0A1B6QH60	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:KXG37238	ProteinID:KXG37238
ProteinID:KXG37238.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3001G031900
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000220704D	:

Description

hypothetical protein

Coordinates

chr1:+:2416592..2424714

Molecular Weight (calculated)

23682.0 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.290

Length

215 amino acids

Sequence
(BLAST)

001: MAHRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQIEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQTF
101: ENIQRWLREL RDHADSNIVI MMVGNKSDLN HLRSVAEEDG QALAEKEGLS FLETSALEAL NVEKAFQTVL SDIHQIISKK ALAAQEAAGS GPPSQGTTIN
201: IADSSANTKR GCCSS

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.