Factsheet for Os03t0823700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	96.28	96.28
KXG37238	Sorghum	cytosol	95.81	95.81
Zm00001d034675_P002	Maize	cytosol	94.42	94.42
TraesCS5A01G485100.1	Wheat	cytosol, golgi	93.02	93.02
TraesCS5D01G498600.1	Wheat	cytosol	92.56	92.56
TraesCS5B01G498600.1	Wheat	cytosol, plastid	92.56	92.56
GSMUA_Achr6P14930_001	Banana	cytosol	70.23	88.3
Os01t0848700-01	Rice	cytosol, plasma membrane	85.12	84.72
KRH15036	Soybean	cytosol, nucleus	83.72	83.33
Solyc05g052900.2.1	Tomato	cytosol	83.26	83.26
Solyc03g079900.2.1	Tomato	cytosol	83.26	83.26
PGSC0003DMT400069776	Potato	cytosol	83.26	83.26
PGSC0003DMT400055848	Potato	cytosol	82.79	83.18
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	83.72	82.95
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	82.33	81.57
VIT_13s0019g02470.t01	Wine grape	cytosol	84.65	75.52
Os03t0843100-01	Rice	cytosol	73.02	70.4
Os05t0105100-01	Rice	golgi, plasma membrane	70.7	69.09
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	66.05	65.44
Os05t0564400-02	Rice	plasma membrane	65.58	64.98
Os09t0327100-01	Rice	plasma membrane	65.12	64.81
Os10t0377400-01	Rice	cytosol	62.33	62.04
Os06t0714600-01	Rice	cytosol	51.16	48.89
Os09t0527600-01	Rice	cytosol, plasma membrane	51.63	46.44

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4334619	ProteinID:AAO18437.1	ProteinID:ABF99618.1	EMBL:AK061336
ProteinID:BAF13658.1	ProteinID:BAS87126.1	ProteinID:EEE60204.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:Os03g0823700	EnsemblPlants:Os03t0823700-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	UniProt:Q852B4	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0000002776	RefSeq:XP_015632229.1	:	:	:

Description

small GTP-binding protein OsRab11B2Similar to Ras-related protein Rab11C. (Os03t0823700-01);Similar to Ras-related protein Rab11C. (Os03t0823700-02)

Coordinates

chr3:-:34593134..34596487

Molecular Weight (calculated)

23805.2 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.306

Length

215 amino acids

Sequence
(BLAST)

001: MAHRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQIEGQT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQTF
101: ENIQRWLREL RDHADSNIVI MMVGNKSDLN HLRSVPEEDG QALAEKEGLS FLETSALEAL NVEKAFQTIL KDIHQIISKK ALAAQEAAGS GPPTQGTTIN
201: VTDSAVNTKR GCCSS

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.