Factsheet for Os05t0105100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 2
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0837300-02
Os04t0429800-01
Os04t0594400-01
Os04t0624800-01
Os06t0112400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	Os03t0837300-02	AT2G23420.1	21798944
AT1G09630.1	Os04t0429800-01	AT2G23420.1	21798944
AT1G09630.1	Os04t0594400-01	AT4G17720.1	21798944
AT1G09630.1	Os04t0624800-01	AT4G17720.1	21798944
AT1G09630.1	Os06t0112400-01	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77196	Sorghum	cytosol	94.55	94.55
TraesCS1D01G013300.1	Wheat	cytosol	89.09	87.89
HORVU1Hr1G001920.2	Barley	cytosol	89.55	87.56
TraesCS1B01G018900.1	Wheat	cytosol	88.64	87.44
TraesCS1A01G015400.1	Wheat	cytosol	87.73	86.55
GSMUA_Achr2P05630_001	Banana	cytosol	82.27	84.19
GSMUA_Achr6P28910_001	Banana	cytosol	82.27	83.41
VIT_12s0035g01140.t01	Wine grape	extracellular	79.09	80.93
Solyc01g103380.2.1	Tomato	nucleus	78.18	80.37
PGSC0003DMT400064102	Potato	cytosol	78.18	80.37
Bra020006.1-P	Field mustard	cytosol	78.64	79.72
CDY50888	Canola	cytosol	78.64	79.72
CDX93495	Canola	cytosol	78.18	79.26
KRH26288	Soybean	endoplasmic reticulum	78.18	79.26
KRH06049	Soybean	endoplasmic reticulum	77.27	78.7
AT1G09630.1	Thale cress	cytosol	77.27	78.34
Solyc10g045550.1.1	Tomato	nucleus	75.45	77.21
GSMUA_Achr6P18430_001	Banana	cytosol	73.64	72.0
Os03t0823700-01	Rice	plasma membrane	69.09	70.7
Os03t0843100-01	Rice	cytosol	70.45	69.51
Os01t0848700-01	Rice	cytosol, plasma membrane	67.27	68.52
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	66.36	67.28
Os09t0327100-01	Rice	plasma membrane	65.45	66.67
PGSC0003DMT400045950	Potato	cytosol	75.91	65.49
Os05t0564400-02	Rice	plasma membrane	64.09	64.98
Os10t0377400-01	Rice	cytosol	59.09	60.19
Os06t0714600-01	Rice	cytosol	51.36	50.22
Os09t0527600-01	Rice	cytosol, plasma membrane	52.27	48.12

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4337555	ProteinID:AAS88840.1	ProteinID:AAU44167.1	EMBL:AK102713
ProteinID:BAF16322.1	ProteinID:BAS91864.1	ProteinID:EEE62028.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	EnsemblPlantsGene:Os05g0105100	EnsemblPlants:Os05t0105100-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	UniProt:Q75M17
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0000358516	RefSeq:XP_015639165.1	SEG:seg	:

Description

small GTP-binding protein OsRab11A2Similar to Small GTPase rab11-related. (Os05t0105100-01)

Coordinates

chr5:+:284991..287174

Molecular Weight (calculated)

24003.4 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.286

Length

220 amino acids

Sequence
(BLAST)

001: MAGTRRAEEE YDYLFKVVLI GDSGVGKSNL LSRFTRNEFC LESKSTIGVE FATRTLHVEG KIIKAQIWDT AGQERYRAIT SAYYRGALGA VLVYDVSKPT
101: TFDNISRWLK ELRDHADANI RIMLVGNKTD LKHLRAVATD DAHKFAEAEG LSYIETSALE ATNVEEAFQL ILGDIYRAIS KKPVASDEGG AGAAGGVKEG
201: KTINVAAGDA NSEKKQCCST

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.