Factsheet for GSMUA_Achr6P28910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P08220_001
GSMUA_Achr5P14070_001
GSMUA_Achr8P14700_001
GSMUA_Achr9P23330_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT1G09630.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT1G09630.1	GSMUA_Achr5P14070_001	AT4G17720.1	21798944
AT1G09630.1	GSMUA_Achr8P14700_001	AT4G17720.1	21798944
AT1G09630.1	GSMUA_Achr9P23330_001	AT4G17720.1	21798944
AT1G09630.1	GSMUA_AchrUn_...	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05630_001	Banana	cytosol	89.86	90.7
Bra020006.1-P	Field mustard	cytosol	85.71	85.71
CDY50888	Canola	cytosol	85.71	85.71
CDX93495	Canola	cytosol	85.25	85.25
KRH26288	Soybean	endoplasmic reticulum	85.25	85.25
Solyc01g103380.2.1	Tomato	nucleus	83.87	85.05
PGSC0003DMT400064102	Potato	cytosol	83.87	85.05
VIT_12s0035g01140.t01	Wine grape	extracellular	83.87	84.65
Solyc10g045550.1.1	Tomato	nucleus	83.87	84.65
AT1G09630.1	Thale cress	cytosol	83.87	83.87
KRH06049	Soybean	endoplasmic reticulum	83.41	83.8
OQU77196	Sorghum	cytosol	83.87	82.73
Os05t0105100-01	Rice	golgi, plasma membrane	83.41	82.27
HORVU1Hr1G001920.2	Barley	cytosol	82.49	79.56
TraesCS1D01G013300.1	Wheat	cytosol	81.11	78.92
TraesCS1B01G018900.1	Wheat	cytosol	81.11	78.92
TraesCS1A01G015400.1	Wheat	cytosol	80.65	78.48
GSMUA_Achr6P18430_001	Banana	cytosol	78.8	76.0
Os03t0843100-01	Rice	cytosol	75.12	73.09
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	74.65	72.65
PGSC0003DMT400045950	Potato	cytosol	84.33	71.76
EER98344	Sorghum	cytosol	73.27	71.3
TraesCS5B01G530800.1	Wheat	cytosol	72.81	70.85
TraesCS4A01G343500.1	Wheat	cytosol	72.81	70.22
TraesCS5D01G529500.1	Wheat	cytosol	72.81	70.22
GSMUA_Achr6P14930_001	Banana	cytosol	54.84	69.59
GSMUA_Achr7P26890_001	Banana	cytosol	59.45	68.98
GSMUA_Achr9P03770_001	Banana	cytosol	58.99	68.45
GSMUA_Achr5P28770_001	Banana	cytosol	67.28	67.28
GSMUA_Achr3P15680_001	Banana	plasma membrane	67.28	67.28
GSMUA_Achr9P05610_001	Banana	cytosol	66.36	66.98
GSMUA_Achr8P02230_001	Banana	plasma membrane	65.9	66.2
GSMUA_Achr8P27780_001	Banana	cytosol	54.38	65.56
GSMUA_Achr3P15540_001	Banana	cytosol	64.06	64.35
GSMUA_Achr4P02540_001	Banana	cytosol	56.22	63.54
GSMUA_Achr5P09130_001	Banana	cytosol	63.13	63.13
GSMUA_Achr8P27180_001	Banana	cytosol	62.67	62.96
Zm00001d034803_P001	Maize	cytosol	66.36	61.54
GSMUA_Achr6P31790_001	Banana	cytosol	47.0	61.45
Zm00001d034802_P001	Maize	cytosol	65.9	61.11
GSMUA_Achr1P11940_001	Banana	cytosol	60.83	61.11
EER90540	Sorghum	cytosol	64.98	59.75
GSMUA_Achr3P01690_001	Banana	cytosol	58.99	58.45
GSMUA_Achr4P02760_001	Banana	cytosol	51.15	58.42
GSMUA_Achr7P14790_001	Banana	cytosol	51.61	58.33
GSMUA_Achr3P11810_001	Banana	cytosol	59.91	57.78
GSMUA_Achr8P18090_001	Banana	cytosol	57.6	57.34
GSMUA_Achr1P04780_001	Banana	cytosol	52.53	57.0
GSMUA_Achr3P21290_001	Banana	cytosol	55.76	55.25
GSMUA_Achr1P16540_001	Banana	cytosol	51.15	55.22
GSMUA_Achr1P19620_001	Banana	cytosol	57.14	53.68
GSMUA_Achr3P13850_001	Banana	cytosol	56.68	52.56
GSMUA_Achr9P00860_001	Banana	cytosol	54.38	51.3
HORVU5Hr1G120210.4	Barley	plastid	72.81	50.0
GSMUA_Achr7P10970_001	Banana	cytosol	54.38	46.64

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G28910_001	EnsemblPlants:GSMUA_Achr6P28910_001	EnsemblPlants:GSMUA_Achr6T28910_001
UniProt:M0TB36	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002956DD1	:	:

Description

Ras-related protein RABA2a [Source:GMGC_GENE;Acc:GSMUA_Achr6G28910_001]

Coordinates

chr6:+:29182507..29186945

Molecular Weight (calculated)

24064.5 Da

IEP (calculated)

5.462

GRAVY (calculated)

-0.277

Length

217 amino acids

Sequence
(BLAST)

001: MARRAEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRI IKSQIWDTAG QERYRAITSA YYRGALGAIL VYDVTKPTTF
101: ENVSRWLKEL RDHADPNIVI MLIGNKTDLK QLRAVASEDA QSYAETEGLS YIETSALEAT NVEQAFQLIL AEIYRVISKK NISSDEPGPG IAGSVKEGKT
201: IVVSASESNT KKQCCST

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.