Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G529500.1 | Wheat | cytosol | 98.67 | 98.67 |
| TraesCS5B01G530800.1 | Wheat | cytosol | 97.78 | 98.65 |
| Os03t0843100-01 | Rice | cytosol | 81.33 | 82.06 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 72.0 | 75.35 |
| KRH06049 | Soybean | endoplasmic reticulum | 72.0 | 75.0 |
| KRH26288 | Soybean | endoplasmic reticulum | 72.0 | 74.65 |
| PGSC0003DMT400064102 | Potato | cytosol | 70.67 | 74.3 |
| Solyc01g103380.2.1 | Tomato | nucleus | 70.67 | 74.3 |
| CDY50888 | Canola | cytosol | 71.56 | 74.19 |
| CDX93495 | Canola | cytosol | 71.11 | 73.73 |
| Bra020006.1-P | Field mustard | cytosol | 71.11 | 73.73 |
| AT1G09630.1 | Thale cress | cytosol | 70.67 | 73.27 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 70.22 | 72.81 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 69.33 | 72.56 |
| Solyc10g045550.1.1 | Tomato | nucleus | 68.89 | 72.09 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 71.56 | 71.56 |
| Zm00001d034802_P001 | Maize | cytosol | 72.0 | 69.23 |
| Zm00001d034803_P001 | Maize | cytosol | 72.0 | 69.23 |
| EER90540 | Sorghum | cytosol | 72.44 | 69.07 |
| TraesCS3A01G364100.1 | Wheat | cytosol | 65.33 | 68.06 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 65.33 | 68.06 |
| HORVU5Hr1G120210.4 | Barley | plastid | 95.11 | 67.72 |
| TraesCS1A01G015400.1 | Wheat | cytosol | 66.67 | 67.26 |
| TraesCS7A01G354400.1 | Wheat | golgi | 64.44 | 66.82 |
| TraesCS5A01G485100.1 | Wheat | cytosol, golgi | 63.56 | 66.51 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 63.56 | 66.2 |
| TraesCS3A01G289600.1 | Wheat | cytosol | 64.89 | 66.06 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 63.11 | 65.74 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 63.56 | 65.6 |
| PGSC0003DMT400045950 | Potato | cytosol | 68.44 | 60.39 |
| TraesCS1A01G131500.2 | Wheat | cytosol | 57.78 | 60.19 |
| TraesCS5A01G176000.1 | Wheat | cytosol | 58.67 | 58.41 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 51.56 | 46.96 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF564 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS4A01G343500 |
| EnsemblPlants:TraesCS4A01G343500.1 | TIGR:cd01868 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:623326714..623328353
Molecular Weight (calculated)
24369.7 Da
IEP (calculated)
8.181
GRAVY (calculated)
-0.155
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARARRAAA WEQGGDEYDY LFKVVLIGDS GVGKSNLLSR FTKNTFSLDS KSTIGVEFAT RTTQVEGKTI KAQIWDTAGQ ERYRAITSAY YRGAVGALLV
101: YDVTKAATFD NVKRWLKELR DHADSNIVIM LIGNKTDLRH LRSVATDKAA GFAEWEALSF IETSALDATN VDKAFQTVLA EIYRVVSKKA LSSTDDSGAG
201: AVGEGQSILV SGGEPASVSS RCCSF
101: YDVTKAATFD NVKRWLKELR DHADSNIVIM LIGNKTDLRH LRSVATDKAA GFAEWEALSF IETSALDATN VDKAFQTVLA EIYRVVSKKA LSSTDDSGAG
201: AVGEGQSILV SGGEPASVSS RCCSF
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.