Factsheet for TraesCS7A01G354400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G368300.1	Wheat	cytosol	100.0	100.0
TraesCS7B01G273300.1	Wheat	plastid	99.08	99.08
EER89913	Sorghum	cytosol	96.31	96.31
Zm00001d046313_P001	Maize	plastid	95.39	95.39
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	94.47	94.47
HORVU7Hr1G089120.1	Barley	cytosol	99.08	87.04
TraesCS5A01G184100.1	Wheat	golgi, plastid	80.65	81.02
TraesCS7A01G285200.1	Wheat	cytosol	79.72	80.09
TraesCS1A01G398400.1	Wheat	cytosol	79.72	80.09
TraesCS3A01G289600.1	Wheat	cytosol	80.65	79.19
TraesCS3A01G247000.1	Wheat	cytosol	74.65	74.31
Zm00001d037004_P002	Maize	cytosol	96.31	72.82
TraesCS3A01G364100.1	Wheat	cytosol	67.74	68.06
TraesCS5A01G485100.1	Wheat	cytosol, golgi	67.28	67.91
TraesCS1A01G015400.1	Wheat	cytosol	66.36	64.57
TraesCS4A01G343500.1	Wheat	cytosol	66.82	64.44
TraesCS1A01G131500.2	Wheat	cytosol	58.53	58.8
TraesCS5A01G176000.1	Wheat	cytosol	60.83	58.41
TraesCS5A01G315700.1	Wheat	cytosol	53.92	47.37

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS7A01G354400
EnsemblPlants:TraesCS7A01G354400.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:518806855..518809691

Molecular Weight (calculated)

23937.2 Da

IEP (calculated)

5.433

GRAVY (calculated)

-0.323

Length

217 amino acids

Sequence
(BLAST)

001: MAAGYRAEDD YDYLFKVVLI GDSGVGKSNL LSRFTRNEFS LESKSTIGVE FATRSLQVDG KVVKAQIWDT AGQERYRAIT SAYYRGAVGA LLVYDVTRHA
101: TFENAERWLK ELRDHTDPNI VVMLVGNKSD LRHLVAVPTD EGKAFAERES LYFMETSALE STNVEDAFAE VLKQIYRIVS KRAVEAGEDS AAGPGKGEKI
201: NMKDDVSAVK KGGCCSS

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.