Factsheet for TraesCS5A01G485100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G498600.1	Wheat	cytosol	99.53	99.53
TraesCS5B01G498600.1	Wheat	cytosol, plastid	99.53	99.53
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	96.74	96.74
KXG37238	Sorghum	cytosol	93.49	93.49
Zm00001d034675_P002	Maize	cytosol	93.02	93.02
Os03t0823700-01	Rice	plasma membrane	93.02	93.02
GSMUA_Achr6P14930_001	Banana	cytosol	68.84	86.55
TraesCS3A01G364100.1	Wheat	cytosol	82.79	82.41
Solyc03g079900.2.1	Tomato	cytosol	81.86	81.86
PGSC0003DMT400055848	Potato	cytosol	81.4	81.78
KRH15036	Soybean	cytosol, nucleus	81.86	81.48
PGSC0003DMT400069776	Potato	cytosol	81.4	81.4
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	81.86	81.11
Solyc05g052900.2.1	Tomato	cytosol	80.93	80.93
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	81.4	80.65
VIT_13s0019g02470.t01	Wine grape	cytosol	83.26	74.27
TraesCS1A01G015400.1	Wheat	cytosol	70.23	67.71
TraesCS7A01G354400.1	Wheat	golgi	67.91	67.28
TraesCS5A01G184100.1	Wheat	golgi, plastid	66.05	65.74
TraesCS7A01G285200.1	Wheat	cytosol	65.12	64.81
TraesCS1A01G398400.1	Wheat	cytosol	65.12	64.81
TraesCS4A01G343500.1	Wheat	cytosol	66.51	63.56
TraesCS3A01G289600.1	Wheat	cytosol	65.12	63.35
TraesCS3A01G247000.1	Wheat	cytosol	62.79	61.93
TraesCS1A01G131500.2	Wheat	cytosol	61.4	61.11
TraesCS5A01G176000.1	Wheat	cytosol	57.21	54.42
TraesCS5A01G315700.1	Wheat	cytosol	49.77	43.32

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5A01G485100
EnsemblPlants:TraesCS5A01G485100.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:656466727..656468774

Molecular Weight (calculated)

23612.0 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.272

Length

215 amino acids

Sequence
(BLAST)

001: MAHRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKLSF
101: ENINRWLSEL RNHADSNIVI MMVGNKSDLN HLRSVQEEEG QALAEKEGLS FLETSALEAL NVEKAFQTIL SDIHQIISKK ALAAQEAAGS GPPTQGTTIN
201: VADSSGNTKK GCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.