Factsheet for VIT_13s0019g02470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	80.91	89.86
KRH15036	Soybean	cytosol, nucleus	80.08	89.35
Solyc03g079900.2.1	Tomato	cytosol	79.67	89.3
PGSC0003DMT400055848	Potato	cytosol	79.25	89.25
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	79.25	88.02
PGSC0003DMT400069776	Potato	cytosol	78.01	87.44
Solyc05g052900.2.1	Tomato	cytosol	77.18	86.51
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	77.18	85.71
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	75.93	85.12
Zm00001d034675_P002	Maize	cytosol	75.52	84.65
KXG37238	Sorghum	cytosol	75.52	84.65
Os03t0823700-01	Rice	plasma membrane	75.52	84.65
GSMUA_Achr6P14930_001	Banana	cytosol	59.34	83.63
TraesCS5A01G485100.1	Wheat	cytosol, golgi	74.27	83.26
TraesCS5B01G498600.1	Wheat	cytosol, plastid	74.27	83.26
TraesCS5D01G498600.1	Wheat	cytosol	74.27	83.26
GSMUA_Achr9P03770_001	Banana	cytosol	63.9	82.35
GSMUA_Achr7P26890_001	Banana	cytosol	63.9	82.35
GSMUA_Achr8P02230_001	Banana	plasma membrane	72.61	81.02
GSMUA_Achr5P28770_001	Banana	cytosol	72.2	80.18
VIT_12s0035g01140.t01	Wine grape	extracellular	67.22	75.35
VIT_10s0003g00550.t01	Wine grape	cytosol	62.24	69.12
VIT_19s0014g01820.t01	Wine grape	cytosol	62.24	69.12
VIT_12s0028g02650.t01	Wine grape	cytosol	61.41	68.52
VIT_08s0007g07800.t01	Wine grape	cytosol	56.02	60.54
VIT_13s0064g01300.t01	Wine grape	cytosol	56.43	60.18
VIT_07s0191g00030.t01	Wine grape	cytosol	55.6	59.29
VIT_19s0014g01160.t01	Wine grape	extracellular	61.41	58.73
VIT_15s0048g03000.t01	Wine grape	cytosol	51.45	51.88

Protein Annotations

EntrezGene:100242736	wikigene:100242736	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:AM484190	ProteinID:CAN73117
ProteinID:CAN73117.1	ProteinID:CBI31604	ProteinID:CBI31604.3	UniProt:D7TLL7	EMBL:FN595998	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100242736	wikigene:LOC100242736	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001BE3D68	ArrayExpress:VIT_13s0019g02470
EnsemblPlantsGene:VIT_13s0019g02470	EnsemblPlants:VIT_13s0019g02470.t01	RefSeq:XP_002282090	RefSeq:XP_002282090.1	:	:

Description

No Description!

Coordinates

chr13:-:3712203..3715117

Molecular Weight (calculated)

26905.3 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.071

Length

241 amino acids

Sequence
(BLAST)

001: MAYKVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVQRWLREL RDHADSNIVI MMAGNKSDLN HLRAVSGDDA QILAEKEGLS FLETSALEAL NVEKAFQTIL LDIYHIISKK ALAAQEAASI NLPHGTTINV
201: GDLSGTVVKS GSLYSREINE RHICECSCFF LMPILQKLLC G

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.