Factsheet for GSMUA_Achr8P02230_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P26890_001	Banana	cytosol	78.7	90.91
GSMUA_Achr9P03770_001	Banana	cytosol	78.7	90.91
GSMUA_Achr5P28770_001	Banana	cytosol	87.5	87.1
GSMUA_Achr6P14930_001	Banana	cytosol	66.2	83.63
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	81.02	80.65
Solyc03g079900.2.1	Tomato	cytosol	79.63	80.0
PGSC0003DMT400055848	Potato	cytosol	79.17	79.91
KRH15036	Soybean	cytosol, nucleus	79.63	79.63
PGSC0003DMT400069776	Potato	cytosol	78.24	78.6
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	78.7	78.34
Solyc05g052900.2.1	Tomato	cytosol	77.31	77.67
VIT_13s0019g02470.t01	Wine grape	cytosol	81.02	72.61
GSMUA_Achr2P05630_001	Banana	cytosol	68.98	69.3
GSMUA_Achr6P28910_001	Banana	cytosol	66.2	65.9
GSMUA_Achr6P18430_001	Banana	cytosol	67.13	64.44
GSMUA_Achr8P27780_001	Banana	cytosol	52.78	63.33
GSMUA_Achr3P15680_001	Banana	plasma membrane	63.43	63.13
GSMUA_Achr8P27180_001	Banana	cytosol	62.04	62.04
GSMUA_Achr9P05610_001	Banana	cytosol	61.57	61.86
GSMUA_Achr5P09130_001	Banana	cytosol	61.57	61.29
GSMUA_Achr3P15540_001	Banana	cytosol	61.11	61.11
GSMUA_Achr1P11940_001	Banana	cytosol	60.19	60.19
GSMUA_Achr4P02540_001	Banana	cytosol	51.85	58.33
GSMUA_Achr1P16540_001	Banana	cytosol	54.17	58.21
GSMUA_Achr6P31790_001	Banana	cytosol	44.44	57.83
GSMUA_Achr3P01690_001	Banana	cytosol	58.33	57.53
GSMUA_Achr8P18090_001	Banana	cytosol	57.87	57.34
GSMUA_Achr3P21290_001	Banana	cytosol	57.87	57.08
GSMUA_Achr1P04780_001	Banana	cytosol	52.31	56.5
GSMUA_Achr4P02760_001	Banana	cytosol	49.54	56.32
GSMUA_Achr3P11810_001	Banana	cytosol	58.33	56.0
GSMUA_Achr1P19620_001	Banana	cytosol	57.41	53.68
GSMUA_Achr7P14790_001	Banana	cytosol	47.22	53.12
GSMUA_Achr3P13850_001	Banana	cytosol	56.02	51.71
GSMUA_Achr9P00860_001	Banana	cytosol	52.31	49.13
GSMUA_Achr7P10970_001	Banana	cytosol	50.46	43.08

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G02230_001	EnsemblPlants:GSMUA_Achr8P02230_001	EnsemblPlants:GSMUA_Achr8T02230_001
UniProt:M0TLX5	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002961469	:	:

Description

Ras-related protein Rab11C [Source:GMGC_GENE;Acc:GSMUA_Achr8G02230_001]

Coordinates

chr8:-:1639509..1641451

Molecular Weight (calculated)

23831.3 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.256

Length

216 amino acids

Sequence
(BLAST)

001: MAHRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLD SKSTIGVEFA TKTLQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQTF
101: DSIQRWLREL RDHADSNIVI ILAGNKSDLK HLRAISQDEG RALAEKEGLS FLETSALESL NVDKAFQTII SEIYHIINKK ALAAQEAART AGPPVQGTTI
201: DVSDSAGGSR SACCSR

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.