Factsheet for GSMUA_Achr3P15680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27780_001	Banana	cytosol	76.5	92.22
GSMUA_Achr9P05610_001	Banana	cytosol	91.24	92.09
GSMUA_Achr6P31790_001	Banana	cytosol	69.59	90.96
GSMUA_Achr4P02540_001	Banana	cytosol	79.26	89.58
CDY35128	Canola	cytosol	84.33	84.72
AT1G16920.1	Thale cress	cytosol	83.87	84.26
KRH27364	Soybean	endoplasmic reticulum	83.41	83.41
Bra026016.1-P	Field mustard	cytosol	82.95	83.33
CDY40023	Canola	cytosol	82.95	83.33
CDX96799	Canola	cytosol	82.95	83.33
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.95	82.95
TraesCS3D01G289400.1	Wheat	cytosol	84.33	82.81
TraesCS3B01G324300.1	Wheat	cytosol, golgi	83.87	82.35
TraesCS3A01G289600.1	Wheat	cytosol	83.87	82.35
EES19812	Sorghum	cytosol	81.11	80.0
GSMUA_Achr3P15540_001	Banana	cytosol	76.04	76.39
VIT_19s0014g01160.t01	Wine grape	extracellular	86.64	74.6
GSMUA_Achr8P27180_001	Banana	cytosol	74.19	74.54
GSMUA_Achr5P09130_001	Banana	cytosol	74.19	74.19
GSMUA_Achr1P11940_001	Banana	cytosol	73.27	73.61
GSMUA_Achr4P02760_001	Banana	cytosol	64.06	73.16
GSMUA_Achr6P14930_001	Banana	cytosol	56.68	71.93
GSMUA_Achr1P04780_001	Banana	cytosol	63.13	68.5
GSMUA_Achr7P14790_001	Banana	cytosol	60.37	68.23
GSMUA_Achr9P03770_001	Banana	cytosol	58.53	67.91
CDX81790	Canola	plastid	83.41	67.79
GSMUA_Achr6P28910_001	Banana	cytosol	67.28	67.28
GSMUA_Achr2P05630_001	Banana	cytosol	66.36	66.98
GSMUA_Achr7P26890_001	Banana	cytosol	57.14	66.31
GSMUA_Achr5P28770_001	Banana	cytosol	65.44	65.44
GSMUA_Achr6P18430_001	Banana	cytosol	66.36	64.0
HORVU3Hr1G071740.1	Barley	plastid	84.33	63.99
GSMUA_Achr8P02230_001	Banana	plasma membrane	63.13	63.43
GSMUA_Achr3P11810_001	Banana	cytosol	64.52	62.22
GSMUA_Achr1P16540_001	Banana	cytosol	56.22	60.7
GSMUA_Achr1P19620_001	Banana	cytosol	64.52	60.61
GSMUA_Achr8P18090_001	Banana	cytosol	57.6	57.34
GSMUA_Achr3P01690_001	Banana	cytosol	57.6	57.08
GSMUA_Achr3P21290_001	Banana	cytosol	56.68	56.16
GSMUA_Achr7P10970_001	Banana	cytosol	60.83	52.17
GSMUA_Achr3P13850_001	Banana	cytosol	54.84	50.85
GSMUA_Achr9P00860_001	Banana	cytosol	53.0	50.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G15680_001	EnsemblPlants:GSMUA_Achr3P15680_001	EnsemblPlants:GSMUA_Achr3T15680_001
UniProt:M0SEY4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295AC87	:	:

Description

Ras-related protein Rab11D [Source:GMGC_GENE;Acc:GSMUA_Achr3G15680_001]

Coordinates

chr3:+:16722773..16730941

Molecular Weight (calculated)

24241.6 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.365

Length

217 amino acids

Sequence
(BLAST)

001: MAGYRAEDDY DYLFKLVLIG DSGVGKSNLL SRFTRNEFNL ESKSTIGVEF ATRSITVDTK VLKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRPT
101: FENVSRWLKE LRDHTDPNIV VMLIGNKSDL RHLVAVPTED GKAYAERESL YFMETSALEA TNVDKAFQEV LTQIYRIVSK KAVEAGDDAT SSVPSKGERI
201: NVKDDASTLK KPSCCSS

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.