CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27364	Soybean	endoplasmic reticulum	98.62	98.62
AT1G16920.1	Thale cress	cytosol	87.56	87.96
CDY35128	Canola	cytosol	87.1	87.5
Bra026016.1-P	Field mustard	cytosol	86.64	87.04
CDX96799	Canola	cytosol	86.64	87.04
CDY40023	Canola	cytosol	86.64	87.04
GSMUA_Achr4P02540_001	Banana	cytosol	75.58	85.42
GSMUA_Achr3P15680_001	Banana	plasma membrane	82.95	82.95
GSMUA_Achr9P05610_001	Banana	cytosol	82.03	82.79
GSMUA_Achr8P27780_001	Banana	cytosol	68.66	82.78
EES19812	Sorghum	cytosol	83.41	82.27
KRH22259	Soybean	cytosol, nucleus	81.57	81.19
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	81.57	81.19
TraesCS3A01G289600.1	Wheat	cytosol	82.03	80.54
TraesCS3B01G324300.1	Wheat	cytosol, golgi	81.57	80.09
TraesCS3D01G289400.1	Wheat	cytosol	81.11	79.64
KRH50137	Soybean	cytosol, mitochondrion	78.8	78.8
VIT_19s0014g01160.t01	Wine grape	extracellular	91.24	78.57
KRH20359	Soybean	cytosol, endoplasmic reticulum	78.34	78.34
KRH30863	Soybean	cytosol	77.42	77.42
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	76.96	76.96
GSMUA_Achr6P31790_001	Banana	cytosol	58.53	76.51
KRH25681	Soybean	cytosol	76.04	76.04
KRH55839	Soybean	endoplasmic reticulum	75.58	75.58
KRH22324	Soybean	cytosol, endoplasmic reticulum	74.19	73.85
KRH27001	Soybean	cytosol, endoplasmic reticulum	74.19	73.85
CDX81790	Canola	plastid	86.64	70.41
KRH29738	Soybean	endoplasmic reticulum	68.66	68.98
KRH24729	Soybean	endoplasmic reticulum, nucleus	68.66	68.98
KRH15036	Soybean	cytosol, nucleus	67.74	68.06
KRH26288	Soybean	endoplasmic reticulum	67.74	67.74
KRH06049	Soybean	endoplasmic reticulum	66.82	67.13
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	66.82	66.82
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	66.82	66.82
HORVU3Hr1G071740.1	Barley	plastid	81.57	61.89
KRH59301	Soybean	cytosol, endoplasmic reticulum	62.67	59.39
KRH71891	Soybean	cytosol	59.91	58.3
KRG97554	Soybean	cytosol, endoplasmic reticulum	59.45	57.85
KRH31313	Soybean	endoplasmic reticulum	58.99	57.4
KRH43151	Soybean	cytosol, endoplasmic reticulum	61.75	56.54
KRH75359	Soybean	endoplasmic reticulum	58.06	56.5
KRG88929	Soybean	cytosol	57.6	56.05
KRH33003	Soybean	cytosol	58.06	56.0
KRH36458	Soybean	cytosol	56.68	53.95
KRH27503	Soybean	cytosol	56.68	53.95
KRH06418	Soybean	cytosol	56.22	50.0
KRH68938	Soybean	cytosol	53.92	49.58
KRH47850	Soybean	cytosol	55.76	49.39
KRG97215	Soybean	cytosol	53.46	49.15

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02008373	EnsemblPlantsGene:GLYMA_13G269000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1M2Z5	EnsemblPlants:KRH21946
ProteinID:KRH21946	ProteinID:KRH21946.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001EE997B	:

Description

hypothetical protein

Coordinates

chr13:+:37128405..37133047

Molecular Weight (calculated)

24065.4 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.250

Length

217 amino acids

Sequence
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLNVDSK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHAT
101: FENVDRWLKE LRNHTDANIV VMLVGNKSDL RHLVAVSTED GKSYAEKESL YFMETSALEA TNVENAFAEV LTQIYHIVSK KAVEVAENGT TSVPAKGEKI
201: DLKNDVSALK RVGCCSS

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.