CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05675
KRH28917
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	KRH05675	AT3G06540.1	21798944
AT5G60860.1	KRH28917	AT3G06540.1	21798944
AT5G60860.1	KRH76543	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	96.77	96.77
KRH20359	Soybean	cytosol, endoplasmic reticulum	94.93	94.93
KRH50137	Soybean	cytosol, mitochondrion	93.55	93.55
KRH25681	Soybean	cytosol	92.17	92.17
KRH55839	Soybean	endoplasmic reticulum	91.71	91.71
VIT_10s0003g00550.t01	Wine grape	cytosol	91.24	91.24
AT5G60860.1	Thale cress	cytosol	90.32	90.32
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	89.4	89.81
TraesCS5A01G184100.1	Wheat	golgi, plastid	89.4	89.81
TraesCS7D01G289000.1	Wheat	cytosol	89.4	89.81
TraesCS7A01G285200.1	Wheat	cytosol	89.4	89.81
OQU89311	Sorghum	cytosol	88.94	89.35
TraesCS7B01G200600.1	Wheat	cytosol	88.94	89.35
Os09t0327100-01	Rice	plasma membrane	88.94	89.35
Os05t0564400-02	Rice	plasma membrane	88.94	88.94
TraesCS5D01G188900.1	Wheat	cytosol	88.48	88.89
TraesCS5B01G182200.1	Wheat	cytosol	88.48	88.89
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	87.1	87.5
EES19950	Sorghum	cytosol	87.1	87.5
AT3G15060.1	Thale cress	cytosol	87.1	87.1
CDY30818	Canola	cytosol	87.1	86.7
CDY34094	Canola	cytosol	87.1	86.7
Bra001581.1-P	Field mustard	cytosol	87.1	86.7
Bra030105.1-P	Field mustard	cytosol	87.1	86.7
Bra032914.1-P	Field mustard	cytosol	87.1	86.7
CDX82451	Canola	cytosol	87.1	86.7
CDX94631	Canola	cytosol	87.1	86.7
PGSC0003DMT400033395	Potato	cytosol	86.18	86.57
TraesCS1A01G398400.1	Wheat	cytosol	86.18	86.57
AT1G28550.1	Thale cress	cytosol	86.64	86.24
CDY15659	Canola	cytosol	86.64	86.24
TraesCS1D01G405900.1	Wheat	cytosol	85.71	86.11
TraesCS1B01G426300.1	Wheat	cytosol	85.71	86.11
Solyc03g006270.2.1	Tomato	cytosol	85.71	86.11
CDX90160	Canola	cytosol	85.25	86.05
Bra010860.1-P	Field mustard	cytosol	85.25	86.05
CDX75804	Canola	cytosol	86.18	85.78
CDY35757	Canola	cytosol	86.18	85.78
GSMUA_Achr1P11940_001	Banana	cytosol	85.25	85.65
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	85.25	85.65
CDX79548	Canola	cytosol	77.42	85.28
GSMUA_Achr5P09130_001	Banana	cytosol	85.25	85.25
GSMUA_Achr3P15540_001	Banana	cytosol	84.33	84.72
PGSC0003DMT400058784	Potato	cytosol	83.87	84.65
Solyc10g008840.2.1	Tomato	cytosol	83.87	84.65
AT2G33870.1	Thale cress	cytosol	84.79	84.4
Bra022959.1-P	Field mustard	cytosol	84.79	84.4
GSMUA_Achr8P27180_001	Banana	cytosol	83.41	83.8
Bra021589.1-P	Field mustard	cytosol	82.95	82.57
CDY20100	Canola	cytosol	82.95	82.57
GSMUA_Achr4P02760_001	Banana	cytosol	71.89	82.11
KRH27001	Soybean	cytosol, endoplasmic reticulum	82.03	81.65
KRH22324	Soybean	cytosol, endoplasmic reticulum	81.57	81.19
GSMUA_Achr7P14790_001	Banana	cytosol	71.43	80.73
AT4G18430.1	Thale cress	cytosol	80.65	80.65
GSMUA_Achr1P04780_001	Banana	cytosol	74.19	80.5
TraesCS3D01G244500.1	Wheat	cytosol	80.18	79.82
TraesCS3A01G247000.1	Wheat	cytosol	80.18	79.82
CDY55638	Canola	cytosol	79.72	79.72
CDX76522	Canola	cytosol	79.72	79.72
CDY01540	Canola	cytosol	79.72	79.72
Bra021009.1-P	Field mustard	cytosol	79.26	79.26
Bra012597.1-P	Field mustard	cytosol	79.26	79.26
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	77.42	77.42
KRH27364	Soybean	endoplasmic reticulum	77.42	77.42
OQU87300	Sorghum	cytosol	76.04	75.34
KRH22259	Soybean	cytosol, nucleus	75.58	75.23
Zm00001d043935_P001	Maize	cytosol	76.04	75.0
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	75.12	74.77
CDY60884	Canola	cytosol	74.65	72.65
KRH24729	Soybean	endoplasmic reticulum, nucleus	68.2	68.52
KRH29738	Soybean	endoplasmic reticulum	67.74	68.06
KRH26288	Soybean	endoplasmic reticulum	67.74	67.74
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	67.74	67.74
KRH06049	Soybean	endoplasmic reticulum	66.82	67.13
KRH15036	Soybean	cytosol, nucleus	66.82	67.13
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	65.44	65.44
KRH71891	Soybean	cytosol	61.29	59.64
KRH33003	Soybean	cytosol	60.83	58.67
GSMUA_Achr7P10970_001	Banana	cytosol	67.28	57.71
KRH75359	Soybean	endoplasmic reticulum	58.53	56.95
KRG88929	Soybean	cytosol	58.06	56.5
KRH31313	Soybean	endoplasmic reticulum	56.68	55.16
KRH59301	Soybean	cytosol, endoplasmic reticulum	58.06	55.02
KRH36458	Soybean	cytosol	57.6	54.82
KRH27503	Soybean	cytosol	57.14	54.39
KRG97554	Soybean	cytosol, endoplasmic reticulum	55.3	53.81
KRH43151	Soybean	cytosol, endoplasmic reticulum	57.14	52.32
KRH06418	Soybean	cytosol	57.14	50.82
TraesCS3B01G272300.1	Wheat	cytosol	80.18	50.29
KRH47850	Soybean	cytosol	56.68	50.2
KRH68938	Soybean	cytosol	54.38	50.0
KRG97215	Soybean	cytosol	54.38	50.0

Protein Annotations

EntrezGene:100783534	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02007086	EnsemblPlantsGene:GLYMA_11G210900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1LZI1
EnsemblPlants:KRH30863	ProteinID:KRH30863	ProteinID:KRH30863.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233B0B3

Description

hypothetical protein

Coordinates

chr11:+:30360616..30363340

Molecular Weight (calculated)

24235.7 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.269

Length

217 amino acids

Sequence
(BLAST)

001: MGAYRADEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSIRVDEK VLKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENMERWLKE LRDHTDANIV VMLVGNKADL RHLRAVSTEE ATAFAEREKT FFMETSALES MNVENAFTEV LTQIYHVVSK KALEIGDDPA ALPKGQTINV
201: GSRDDVSAVK KDGCCSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.