CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 6
plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, golgi, nucleus, plasma membrane, plastid, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92561
KRH34233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	KRG92561	AT5G47520.1	21798944
AT3G06540.1	KRH34233	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	86.93	31.28
KRG99022	Soybean	cytosol	16.58	28.21
KRH28917	Soybean	cytosol, peroxisome, plastid	75.38	27.22
Os01t0269100-01	Rice	plasma membrane	38.19	23.53
VIT_04s0044g00070.t01	Wine grape	peroxisome	49.25	17.63
Solyc02g082730.2.1	Tomato	extracellular	48.74	17.57
AT3G06540.1	Thale cress	cytosol	46.73	16.52
CDY34947	Canola	cytosol, plastid, vacuole	45.23	16.42
PGSC0003DMT400003853	Potato	peroxisome	44.72	16.09
CDY24684	Canola	cytosol	45.73	16.08
CDY05274	Canola	plastid	45.23	16.04
Bra029586.1-P	Field mustard	peroxisome	43.72	15.34
Zm00001d040408_P003	Maize	peroxisome	37.19	13.33
KRH71651	Soybean	cytosol, nucleus, peroxisome	13.07	13.27
KXG32246	Sorghum	cytosol, nucleus, peroxisome	37.19	13.24
Zm00001d008269_P001	Maize	peroxisome	36.18	12.93
TraesCS3A01G185700.1	Wheat	cytosol	35.68	12.68
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	35.68	12.68
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	35.68	12.66
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	34.67	12.32
GSMUA_Achr6P03390_001	Banana	peroxisome	28.14	11.38
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	21.61	9.68
KRH59137	Soybean	endoplasmic reticulum	21.11	9.46
KRH49823	Soybean	cytosol, endoplasmic reticulum	20.1	8.99
KRH42088	Soybean	cytosol	20.1	8.99
KRH66563	Soybean	cytosol	16.58	5.92
Zm00001d009201_P001	Maize	cytosol	5.03	5.92
Zm00001d004622_P001	Maize	cytosol	1.01	2.78
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	1.01	2.78

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:100793139	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EMBL:ACUP02010770
InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	EnsemblPlantsGene:GLYMA_17G241600	GO:GO:0003674	GO:GO:0005092	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	UniProt:K7MNP5	EnsemblPlants:KRH05675
ProteinID:KRH05675	ProteinID:KRH05675.1	PFAM:PF00996	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23
SUPFAM:SSF51905	UniParc:UPI000233E662	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:39731696..39732295

Molecular Weight (calculated)

22002.3 Da

IEP (calculated)

4.566

GRAVY (calculated)

0.268

Length

199 amino acids

Sequence
(BLAST)

001: MYLIIVVFSY PSIDPVNFDL IIVGTALSEC VIAVAASVVG KTILHLDPNS FYDSHFASLS FHNLTSYLTS PHSLPSAATV VASSNSDDIV VVDLVHQPFY
101: TDAETATYDE SVFLSENLRK FNIDLGGPRA LFCADKTIDL LMKSGAAQYL EFKGIDESFV YEANAGLVNV LDSRGMIFRD KKLSLEEKNQ LIRFFKLVQ

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.