CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42088	Soybean	cytosol	98.2	98.2
VIT_03s0017g00490.t01	Wine grape	cytosol	73.71	89.86
Bra009390.1-P	Field mustard	cytosol	86.07	86.07
CDX81131	Canola	cytosol	86.07	86.07
CDY21587	Canola	cytosol	86.07	86.07
Bra006026.1-P	Field mustard	cytosol	84.72	85.88
CDY56553	Canola	cytosol	85.84	85.84
AT5G09550.1	Thale cress	cytosol	85.62	85.62
Solyc01g105810.2.1	Tomato	cytosol, unclear	84.72	84.72
TraesCS4B01G205900.1	Wheat	cytosol, golgi	84.49	84.12
Os03t0277000-01	Rice	plasma membrane	84.49	84.12
Zm00001d029596_P001	Maize	cytosol, extracellular	84.04	83.67
TraesCS4D01G206900.1	Wheat	cytosol	84.04	83.67
EER92083	Sorghum	cytosol	84.04	83.67
CDX69899	Canola	cytosol	58.88	83.17
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	81.12	81.31
KRH59137	Soybean	endoplasmic reticulum	81.12	81.31
KRG99022	Soybean	cytosol	20.45	77.78
TraesCS4A01G098400.1	Wheat	cytosol	83.6	76.86
CDY65664	Canola	cytosol	70.79	76.83
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	16.85	65.22
KRH71651	Soybean	cytosol, nucleus, peroxisome	27.64	62.76
GSMUA_Achr7P02920_001	Banana	cytosol	14.38	62.75
Bra028630.1-P	Field mustard	cytosol	85.17	61.83
CDY44805	Canola	cytosol	84.72	59.94
HORVU4Hr1G059230.1	Barley	cytosol	7.87	49.3
KRH66563	Soybean	cytosol	44.49	35.55
KRH05675	Soybean	extracellular, vacuole	8.99	20.1
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	22.92	18.44
KRH28917	Soybean	cytosol, peroxisome, plastid	22.7	18.33

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:100792036	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EMBL:ACUP02004645
InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	EnsemblPlantsGene:GLYMA_07G181700	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790
UniProt:I1KL47	InterPro:IPR036188	EnsemblPlants:KRH49823	ProteinID:KRH49823	ProteinID:KRH49823.1	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905
UniParc:UPI0002337D6C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:34988565..34995187

Molecular Weight (calculated)

49598.8 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.287

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GASTSLNLTQ LWKRFRGDDT PSENLGSSRE YNVDMIPKFM MANGALVRVL IHTDVTKYLN
101: FKAVDGSFVY NKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYE TNDPKSHEGL DLNQVTARQL ISKYGLEDDT VDFIGHALAL HRDDSYLDEP
201: AKDFVDRVKI YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DDNGKAIGVT SEGETAKCKK VVCDPSYLSD KVQKVGKVAR
301: AICIMSHPIP DTNDSHSAQV ILPQKQLGRK SDMYLFCCSY AHNVAAKGKY IAFVTTEAET DQPEVELKPG IDLLGPVDEI FYDIYDRFEP CNDHEADGCF
401: ISTSYDATTH FETTVKDVVE LYSKITGKVL DLSVDLSAAS AATEE

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.