Factsheet for Os03t0277000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029596_P001	Maize	cytosol, extracellular	94.85	94.85
EER92083	Sorghum	cytosol	94.63	94.63
TraesCS4D01G206900.1	Wheat	cytosol	93.96	93.96
TraesCS4B01G205900.1	Wheat	cytosol, golgi	93.96	93.96
GSMUA_Achr10P...	Banana	cytosol	87.25	87.44
GSMUA_Achr10P...	Banana	cytosol	87.02	87.22
GSMUA_Achr9P03980_001	Banana	cytosol	86.58	86.77
TraesCS4A01G098400.1	Wheat	cytosol	93.51	86.36
KRH42088	Soybean	cytosol	84.34	84.72
KRH49823	Soybean	cytosol, endoplasmic reticulum	84.12	84.49
CDY21587	Canola	cytosol	81.88	82.25
CDX81131	Canola	cytosol	81.88	82.25
Bra009390.1-P	Field mustard	cytosol	81.88	82.25
Bra006026.1-P	Field mustard	cytosol	80.76	82.23
VIT_03s0017g00490.t01	Wine grape	cytosol	67.11	82.19
Os05t0304400-01	Rice	plasma membrane	81.66	82.02
AT5G09550.1	Thale cress	cytosol	81.66	82.02
CDY56553	Canola	cytosol	81.66	82.02
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	81.43	81.8
CDX69899	Canola	cytosol	57.27	81.27
HORVU4Hr1G059240.2	Barley	cytosol	94.18	80.81
Solyc01g105810.2.1	Tomato	cytosol, unclear	78.75	79.1
Os07t0271000-01	Rice	plasma membrane	77.18	77.35
VIT_00s2317g00010.t01	Wine grape	cytosol	23.94	75.89
CDY65664	Canola	cytosol	67.56	73.66
KRH71651	Soybean	cytosol, nucleus, peroxisome	28.41	64.8
Bra028630.1-P	Field mustard	cytosol	80.76	58.89
CDY44805	Canola	cytosol	80.31	57.07
KRH66563	Soybean	cytosol	43.18	34.65
Os01t0269100-01	Rice	plasma membrane	15.66	21.67
VIT_00s0313g00050.t01	Wine grape	cytosol, nucleus	66.67	16.0

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EntrezGene:4332418	ProteinID:ABF95264.1
EMBL:AK100522	ProteinID:BAF11631.1	ProteinID:BAS83523.1	ProteinID:EAZ26447.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	EnsemblPlantsGene:Os03g0277000	EnsemblPlants:Os03t0277000-01
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	UniProt:Q10NA3
InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0000DB41B0	RefSeq:XP_015629238.1	SEG:seg

Description

GDP dissociation inhibitor 3GDP dissociation inhibitor, Negative regulator for Rab, Negative feedback between Rab GDP-GTP cycle and MAPK pathways (Os03t0277000-01)

Coordinates

chr3:-:9392349..9395747

Molecular Weight (calculated)

50047.6 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.332

Length

447 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECIIS GLLSVDGLKV LHMDRNDYYG GESTSLNLTK LWKRFKGNET APEHLGVSKE YNVDMVPKFM MANGALVRVL IHTSVTKYLN
101: FKAVDGSFVY NNGKIHKVPA TDVEALKSNL MGLFEKRRAR KFFIYVQDYE EDDPKSHEGL DLHKVTTREV ISKYGLEDDT VDFIGHALAL HRDDNYLDEP
201: AIDTVKRMKL YAESLARFQG GSPYIYPLYG LAELPQAFAR LSAVYGGTYM LNKAECKVEF DENGKAYGVT SEGETAKCKK VVCDPSYLPD KVKKVGRVAR
301: AICIMKHPIP DTKDSHSVQI ILPKKQLKRK SDMYVFCCSY AHNVAPKGKF IAFVSTEAEA DKPEIELKPG IDLLGPVEET FFDIYDRYEP TNTADEDNCF
401: VTNSYDATTH FETTVKDVLA LYSKITGKEL DLSVDLNAAS AAESEAA

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.