Factsheet for Bra006026.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56553	Canola	cytosol	99.32	97.98
Bra009390.1-P	Field mustard	cytosol	97.27	95.96
AT5G09550.1	Thale cress	cytosol	97.04	95.73
KRH49823	Soybean	cytosol, endoplasmic reticulum	85.88	84.72
KRH42088	Soybean	cytosol	85.88	84.72
VIT_03s0017g00490.t01	Wine grape	cytosol	69.02	83.01
Solyc01g105810.2.1	Tomato	cytosol, unclear	82.23	81.12
Os03t0277000-01	Rice	plasma membrane	82.23	80.76
EER92083	Sorghum	cytosol	82.23	80.76
TraesCS4B01G205900.1	Wheat	cytosol, golgi	82.0	80.54
Zm00001d029596_P001	Maize	cytosol, extracellular	81.78	80.31
TraesCS4D01G206900.1	Wheat	cytosol	81.78	80.31
Bra003395.1-P	Field mustard	cytosol	77.45	76.58
Bra004805.1-P	Field mustard	cytosol	76.77	75.9
Bra014523.1-P	Field mustard	cytosol	76.31	75.45
Bra007493.1-P	Field mustard	cytosol	76.08	75.06
TraesCS4A01G098400.1	Wheat	cytosol	82.0	74.38
Bra028630.1-P	Field mustard	cytosol	96.58	69.17
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	17.77	67.83
GSMUA_Achr7P02920_001	Banana	cytosol	12.53	53.92
HORVU4Hr1G059230.1	Barley	cytosol	7.97	49.3
Bra007490.1-P	Field mustard	cytosol	26.65	28.82
Bra029586.1-P	Field mustard	peroxisome	25.06	19.4

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra006026	EnsemblPlants:Bra006026.1
EnsemblPlants:Bra006026.1-P	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790
InterPro:IPR036188	UniProt:M4CP88	PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787
PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000253F82C	SEG:seg

Description

AT5G09550 (E=5e-234) | RAB GDP-dissociation inhibitor

Coordinates

chrA03:+:1657953..1660599

Molecular Weight (calculated)

48858.0 Da

IEP (calculated)

4.960

GRAVY (calculated)

-0.293

Length

439 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PQENLGAIRE YNFIMANGTL VQTLIHTNVT KYLNFKAVDG
101: SFVYKKGKIY KVPATDVEAL KSPLMGLFEK RRARKFFIYV QDYDEKDPKS HEGLDLSKVT AREIISKYGL EDDTIDFIGH ALALHNDDDY LDQPAIDFVM
201: RIKLYAESLA RFQGGSPYIY PLYGLGELPQ AFARLSAVYG GTYMLNKPEC KVEFDSSGKA IGVTSAGETA KCKKVVCDPS YLSDKVKKVG KVARAVCIMS
301: HPIPDTNDAH SVQIILPQKQ LGRKSDMYLF CCSYAHNVAP KGKYIAFVSA EAETDNPEEE LKPGIELLGP TDEIFYHSYD TYVPTNQQEE DNCFISGSYD
401: ATTHFESTVS DVLEMYTKIT GKTLDLSVDL SAASAAAEN

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.