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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH49823 Soybean cytosol, endoplasmic reticulum 84.72 84.72
VIT_03s0017g00490.t01 Wine grape cytosol 69.44 84.66
KRH42088 Soybean cytosol 84.27 84.27
Bra009390.1-P Field mustard cytosol 82.92 82.92
CDY21587 Canola cytosol 82.92 82.92
CDY56553 Canola cytosol 82.7 82.7
AT5G09550.1 Thale cress cytosol 82.47 82.47
CDX81131 Canola cytosol 82.25 82.25
Bra006026.1-P Field mustard cytosol 81.12 82.23
Solyc12g017570.1.1 Tomato plastid 81.57 81.76
Solyc08g015860.2.1 Tomato extracellular 80.9 81.08
CDX69899 Canola cytosol 56.4 79.68
EER92083 Sorghum cytosol 80.0 79.64
Zm00001d029596_P001 Maize cytosol, extracellular 79.78 79.42
Os03t0277000-01 Rice plasma membrane 79.1 78.75
TraesCS4B01G205900.1 Wheat cytosol, golgi 79.1 78.75
TraesCS4D01G206900.1 Wheat cytosol 78.65 78.3
CDY65664 Canola cytosol 67.42 73.17
TraesCS4A01G098400.1 Wheat cytosol 78.2 71.9
GSMUA_Achr7P02930_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 16.85 65.22
KRH71651 Soybean cytosol, nucleus, peroxisome 27.64 62.76
GSMUA_Achr7P02920_001 Banana cytosol 14.16 61.76
Bra028630.1-P Field mustard cytosol 81.8 59.38
CDY44805 Canola cytosol 81.8 57.87
HORVU4Hr1G059230.1 Barley cytosol 8.09 50.7
KRH66563 Soybean cytosol 42.25 33.75
Solyc02g082730.2.1 Tomato extracellular 24.72 19.93
Protein Annotations
Gene3D:1.10.405.10MapMan:22.8.4.2Gene3D:3.30.519.10Gene3D:3.50.50.60UniProt:A5CKE3ProteinID:CAM97308.1
InterPro:FAD/NAD-bd_sfInterPro:GDP_dissociation_inhibitorGO:GO:0003674GO:GO:0005092GO:GO:0005093GO:GO:0005575
GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0006810GO:GO:0007154GO:GO:0007165
GO:GO:0007264GO:GO:0008150GO:GO:0009987GO:GO:0015031GO:GO:0030234GO:GO:0048046
GO:GO:0050790InterPro:IPR036188PFAM:PF00996PRINTS:PR00891PRINTS:PR00892PANTHER:PTHR11787
PANTHER:PTHR11787:SF10InterPro:RabGDISUPFAM:SSF51905SUPFAM:SSF54373EnsemblPlantsGene:Solyc01g105810.2EnsemblPlants:Solyc01g105810.2.1
UniParc:UPI000150B02A:::::
Description
Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A5CKE3]
Coordinates
chr1:+:93849291..93855176
Molecular Weight (calculated)
49613.1 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.254
Length
445 amino acids
Sequence
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDKNDYYG GESSSLNLIQ LWKRFRGNDQ PPEELGTSKE YNVDMIPKFA MANGTLVRVL IHTDVTKYLN
101: FKAVDGSFVY NKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFLYVQDFE ETDPKTHEGM DLNKITAKEF IAKYELEDDT IDFIGHALAL CTDDNYLAQP
201: AMDFIKRVKL YAESLARFQA GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPQCKVEF DDGGKVVGVT SEGETAKCKK VVCDPSYLPD KVQKVGKVAR
301: AICIMSHPIP NTNDSHSAQV ILPQKQLGRK SDMYLFCCSY SHNVAPKGKY IAFVSTEAET DDPESELKPG VDILGAVDEI FYETYDRFIP SHDSAADNCF
401: ISKSYDSTTH FESTVMDVLD MYSKITGKVI DLSVDLSAAS ATAEE
Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN
Arabidopsis Description
Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.