Factsheet for Solyc12g017570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G59920.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g015860.2.1	Tomato	extracellular	94.37	94.37
KRH59137	Soybean	endoplasmic reticulum	91.67	91.67
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	91.44	91.44
VIT_05s0094g01550.t01	Wine grape	cytosol	89.86	89.86
GSMUA_Achr7P23620_001	Banana	cytosol	88.96	89.37
Os05t0304400-01	Rice	plasma membrane	88.74	88.54
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	88.74	88.54
HORVU1Hr1G064490.8	Barley	cytosol	88.51	87.92
GSMUA_Achr6P18380_001	Banana	cytosol	88.29	87.7
TraesCS1A01G260900.1	Wheat	cytosol	87.84	87.64
KXG22017	Sorghum	cytosol	87.61	87.42
TraesCS1D01G260900.1	Wheat	cytosol, golgi	87.39	87.19
TraesCS1B01G271700.1	Wheat	cytosol	87.39	87.19
EES18242	Sorghum	cytosol	87.16	86.97
TraesCS1A01G261000.1	Wheat	cytosol	86.71	86.32
TraesCS1B01G271800.2	Wheat	cytosol, golgi	86.49	86.1
CDY17885	Canola	cytosol	85.36	85.36
CDX79782	Canola	cytosol	85.36	85.36
Bra004805.1-P	Field mustard	cytosol	85.36	85.36
Zm00001d010255_P001	Maize	cytosol, extracellular	87.16	85.24
CDX98399	Canola	cytosol	84.91	84.91
CDX67817	Canola	cytosol	84.91	84.91
CDY45775	Canola	cytosol	84.68	84.68
Bra003395.1-P	Field mustard	cytosol	84.68	84.68
CDX89038	Canola	cytosol	84.46	84.46
Bra014523.1-P	Field mustard	cytosol	84.46	84.46
AT2G44100.1	Thale cress	cytosol	84.46	84.27
AT3G59920.1	Thale cress	cytosol	84.23	84.23
Bra007493.1-P	Field mustard	cytosol	83.11	82.92
CDY05962	Canola	cytosol	82.43	82.43
Zm00001d010251_P003	Maize	cytosol	86.71	82.27
EER98346	Sorghum	cytosol	82.21	81.84
Os07t0271000-01	Rice	plasma membrane	81.98	81.61
TraesCS5A01G041100.1	Wheat	cytosol	81.76	81.57
TraesCS5B01G042400.1	Wheat	cytosol	81.76	81.57
Solyc01g105810.2.1	Tomato	cytosol, unclear	81.76	81.57
GSMUA_Achr10P...	Banana	cytosol	81.53	81.53
CDX71860	Canola	cytosol	74.77	81.17
TraesCS5D01G048100.1	Wheat	cytosol	81.31	81.12
Zm00001d007315_P001	Maize	cytosol	32.43	80.9
HORVU1Hr1G064480.1	Barley	cytosol	80.18	79.82
Zm00001d038200_P002	Maize	plastid	86.04	75.2
Zm00001d005498_P001	Maize	cytosol	82.21	73.89
TraesCS1D01G261000.1	Wheat	golgi	86.71	73.75
HORVU5Hr1G009840.1	Barley	cytosol	81.98	66.67
Zm00001d009786_P001	Maize	plastid	47.07	60.93
Zm00001d011867_P001	Maize	cytosol	48.87	59.29
Zm00001d016318_P002	Maize	cytosol	33.78	53.0
HORVU2Hr1G104740.2	Barley	mitochondrion	10.81	51.06
HORVU7Hr1G075170.1	Barley	mitochondrion	12.39	50.0
Solyc02g082730.2.1	Tomato	extracellular	25.68	20.65

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	UniProt:K4DD89	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905
SUPFAM:SSF54373	EnsemblPlantsGene:Solyc12g017570.1	EnsemblPlants:Solyc12g017570.1.1	UniParc:UPI000276941A	:	:

Description

Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:K4DD89]

Coordinates

chr12:+:6863578..6870564

Molecular Weight (calculated)

49719.4 Da

IEP (calculated)

5.674

GRAVY (calculated)

-0.276

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLVQ LWKRFRGSDK PPAQLGSSRD YNVDMIPKFI MANGALVRVL IHTDVTKYLY
101: FKAVDGSFVY NKGKVHKVPA TDMEALKSPL MGIFEKRRAR KFFIYVQDYK ESDPKTHEGM DLTRVTAREL IAKYGLDDNT VDFIGHALAL HRDDRYLDKP
201: ALDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVCGVT SEGETAKCKK VVCDPSYLNN KVRKVGKVAR
301: AIAIMSHPIP NTNDSHSVQI ILPQKQLGRK SDLYLFCCSY THNVAPKGKF IAFVSTEAET DNPESELKPG IDLLGQVDEI FFEAYDRFEP VNEPSLDNCF
401: ISTSYDATTH FESTVDDVLN MYTLITGKVL DLNVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.