Factsheet for VIT_05s0094g01550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_01s0026g01970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT3G59920.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59137	Soybean	endoplasmic reticulum	90.32	90.32
Solyc12g017570.1.1	Tomato	plastid	89.86	89.86
GSMUA_Achr7P23620_001	Banana	cytosol	89.41	89.82
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	89.64	89.64
PGSC0003DMT400035649	Potato	cytosol	88.74	88.74
Solyc08g015860.2.1	Tomato	extracellular	88.51	88.51
GSMUA_Achr6P18380_001	Banana	cytosol	88.06	87.47
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.71	86.52
EES18242	Sorghum	cytosol	86.26	86.07
TraesCS1D01G260900.1	Wheat	cytosol, golgi	86.04	85.84
Os05t0304400-01	Rice	plasma membrane	86.04	85.84
TraesCS1B01G271700.1	Wheat	cytosol	86.04	85.84
TraesCS1A01G260900.1	Wheat	cytosol	85.59	85.39
HORVU1Hr1G064490.8	Barley	cytosol	85.81	85.23
CDY17885	Canola	cytosol	84.91	84.91
CDX79782	Canola	cytosol	84.68	84.68
Bra004805.1-P	Field mustard	cytosol	84.68	84.68
KXG22017	Sorghum	cytosol	84.68	84.49
TraesCS1A01G261000.1	Wheat	cytosol	84.68	84.3
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.23	83.86
AT3G59920.1	Thale cress	cytosol	83.78	83.78
Bra014523.1-P	Field mustard	cytosol	83.78	83.78
CDX89038	Canola	cytosol	83.78	83.78
CDX67817	Canola	cytosol	83.56	83.56
CDY45775	Canola	cytosol	83.56	83.56
CDX98399	Canola	cytosol	83.56	83.56
AT2G44100.1	Thale cress	cytosol	83.56	83.37
Bra003395.1-P	Field mustard	cytosol	83.33	83.33
Os07t0271000-01	Rice	plasma membrane	82.88	82.51
Zm00001d010255_P001	Maize	cytosol, extracellular	84.23	82.38
EER98346	Sorghum	cytosol	82.43	82.06
Bra007493.1-P	Field mustard	cytosol	82.21	82.02
TraesCS5A01G041100.1	Wheat	cytosol	81.98	81.8
TraesCS5B01G042400.1	Wheat	cytosol	81.98	81.8
CDY05962	Canola	cytosol	81.53	81.53
Zm00001d010251_P003	Maize	cytosol	85.81	81.41
TraesCS5D01G048100.1	Wheat	cytosol	81.53	81.35
VIT_03s0017g00490.t01	Wine grape	cytosol	66.67	81.1
GSMUA_Achr10P...	Banana	cytosol	80.86	80.86
CDX71860	Canola	cytosol	74.1	80.44
VIT_00s2317g00010.t01	Wine grape	cytosol	25.45	80.14
Zm00001d007315_P001	Maize	cytosol	31.53	78.65
HORVU1Hr1G064480.1	Barley	cytosol	77.93	77.58
Zm00001d005498_P001	Maize	cytosol	82.88	74.49
Zm00001d038200_P002	Maize	plastid	84.68	74.02
TraesCS1D01G261000.1	Wheat	golgi	84.68	72.03
HORVU5Hr1G009840.1	Barley	cytosol	81.98	66.67
Zm00001d009786_P001	Maize	plastid	45.95	59.48
Zm00001d011867_P001	Maize	cytosol	47.07	57.1
Zm00001d016318_P002	Maize	cytosol	32.88	51.59
HORVU2Hr1G104740.2	Barley	mitochondrion	10.14	47.87
HORVU7Hr1G075170.1	Barley	mitochondrion	11.71	47.27
VIT_04s0044g00070.t01	Wine grape	peroxisome	25.68	20.5
VIT_00s0313g00050.t01	Wine grape	cytosol, nucleus	65.54	15.63

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:100261021	wikigene:100261021	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60
UniProt:A5BXT5	EMBL:AM475052	ProteinID:CAN70679	ProteinID:CAN70679.1	ProteinID:CBI24770	ProteinID:CBI24770.3
InterPro:FAD/NAD-bd_sf	EMBL:FN595507	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790
InterPro:IPR036188	EntrezGene:LOC100261021	wikigene:LOC100261021	PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892
PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	TIGR:TC59697
TIGR:TC69936	UniParc:UPI0001521D55	ArrayExpress:VIT_05s0094g01550	EnsemblPlantsGene:VIT_05s0094g01550	EnsemblPlants:VIT_05s0094g01550.t01	unigene:Vvi.1570
RefSeq:XP_002280606	RefSeq:XP_002280606.1	SEG:seg	:	:	:

Description

Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A5BXT5]

Coordinates

chr5:+:24820587..24827862

Molecular Weight (calculated)

49812.6 Da

IEP (calculated)

5.349

GRAVY (calculated)

-0.257

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLIQ LWKRFKGNDK PPASLGSSRD YNVDMIPKFM MANGTLVRVL IHTDVTKYLY
101: FKAVDGSYVF NKGKVHKVPA NDVEALKSPL MGLFEKRRAR KFFIFVQDYD ENDPRTHEGM DLTRVTTREL IAKYGLDDNT IDFIGHAIAL HRDDCYLNEP
201: AIDTVKRMKL YSESIARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKAVGVT SEGETARCKK VVCDPSYLPN KVRKVGRVAR
301: AICIMSHPIP NTSDSHSVQV ILPQKQLGRK SDMYLFCCSY SHNVAPKGKF IAFVSTEAET DHPESELKPG IDLLGPVDEI FYDIYERFEP VNEPSLDQCF
401: ISTSYDATTH FESTVMDVLN MYTMITGKVL DLSVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.