Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 | |
| GSMUA_Achr3P19960_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59920.1 | GSMUA_Achr3P19960_001 | AT1G14340.1 | 21798944 |
| AT3G59920.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P23620_001 | Banana | cytosol | 85.81 | 86.2 |
| GSMUA_Achr6P18380_001 | Banana | cytosol | 86.04 | 85.46 |
| Solyc12g017570.1.1 | Tomato | plastid | 81.53 | 81.53 |
| VIT_05s0094g01550.t01 | Wine grape | cytosol | 80.86 | 80.86 |
| KRH59137 | Soybean | endoplasmic reticulum | 80.86 | 80.86 |
| KXG22017 | Sorghum | cytosol | 80.86 | 80.67 |
| KRH43030 | Soybean | cytosol, endoplasmic reticulum, nucleus | 80.63 | 80.63 |
| Os05t0418000-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 80.63 | 80.45 |
| PGSC0003DMT400035649 | Potato | cytosol | 80.18 | 80.18 |
| TraesCS1A01G261000.1 | Wheat | cytosol | 80.41 | 80.04 |
| Solyc08g015860.2.1 | Tomato | extracellular | 79.95 | 79.95 |
| Os05t0304400-01 | Rice | plasma membrane | 79.95 | 79.78 |
| HORVU1Hr1G064490.8 | Barley | cytosol | 80.18 | 79.64 |
| TraesCS1B01G271800.2 | Wheat | cytosol, golgi | 79.95 | 79.6 |
| EES18242 | Sorghum | cytosol | 79.73 | 79.55 |
| TraesCS1D01G260900.1 | Wheat | cytosol, golgi | 79.5 | 79.33 |
| TraesCS1B01G271700.1 | Wheat | cytosol | 79.5 | 79.33 |
| TraesCS1A01G260900.1 | Wheat | cytosol | 79.05 | 78.88 |
| Zm00001d010255_P001 | Maize | cytosol, extracellular | 80.41 | 78.63 |
| GSMUA_Achr9P03980_001 | Banana | cytosol | 77.93 | 77.58 |
| GSMUA_Achr10P... | Banana | cytosol | 77.7 | 77.35 |
| GSMUA_Achr10P... | Banana | cytosol | 77.48 | 77.13 |
| TraesCS5A01G041100.1 | Wheat | cytosol | 76.35 | 76.18 |
| TraesCS5B01G042400.1 | Wheat | cytosol | 76.35 | 76.18 |
| Bra004805.1-P | Field mustard | cytosol | 76.13 | 76.13 |
| CDX79782 | Canola | cytosol | 76.13 | 76.13 |
| CDY17885 | Canola | cytosol | 76.13 | 76.13 |
| TraesCS5D01G048100.1 | Wheat | cytosol | 76.13 | 75.96 |
| AT3G59920.1 | Thale cress | cytosol | 75.68 | 75.68 |
| Os07t0271000-01 | Rice | plasma membrane | 75.9 | 75.56 |
| EER98346 | Sorghum | cytosol | 75.9 | 75.56 |
| CDY45775 | Canola | cytosol | 75.45 | 75.45 |
| CDX98399 | Canola | cytosol | 75.45 | 75.45 |
| CDX89038 | Canola | cytosol | 75.45 | 75.45 |
| CDX67817 | Canola | cytosol | 75.45 | 75.45 |
| Bra014523.1-P | Field mustard | cytosol | 75.45 | 75.45 |
| Bra003395.1-P | Field mustard | cytosol | 75.23 | 75.23 |
| AT2G44100.1 | Thale cress | cytosol | 75.0 | 74.83 |
| Zm00001d010251_P003 | Maize | cytosol | 78.83 | 74.79 |
| CDX71860 | Canola | cytosol | 68.24 | 74.08 |
| Bra007493.1-P | Field mustard | cytosol | 74.1 | 73.93 |
| CDY05962 | Canola | cytosol | 73.87 | 73.87 |
| HORVU1Hr1G064480.1 | Barley | cytosol | 73.42 | 73.09 |
| Zm00001d007315_P001 | Maize | cytosol | 29.05 | 72.47 |
| GSMUA_Achr7P02930_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 18.47 | 71.3 |
| Zm00001d005498_P001 | Maize | cytosol | 76.35 | 68.62 |
| TraesCS1D01G261000.1 | Wheat | golgi | 80.41 | 68.39 |
| Zm00001d038200_P002 | Maize | plastid | 77.93 | 68.11 |
| HORVU5Hr1G009840.1 | Barley | cytosol | 76.58 | 62.27 |
| GSMUA_Achr7P02920_001 | Banana | cytosol | 13.06 | 56.86 |
| Zm00001d009786_P001 | Maize | plastid | 42.79 | 55.39 |
| Zm00001d011867_P001 | Maize | cytosol | 43.69 | 53.01 |
| Zm00001d016318_P002 | Maize | cytosol | 30.63 | 48.06 |
| HORVU2Hr1G104740.2 | Barley | mitochondrion | 8.56 | 40.43 |
| HORVU7Hr1G075170.1 | Barley | mitochondrion | 9.91 | 40.0 |
| GSMUA_Achr6P03390_001 | Banana | peroxisome | 21.62 | 19.51 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.2 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor |
| GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005093 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0030234 | GO:GO:0050790 | EnsemblPlantsGene:GSMUA_Achr10G04310_001 | EnsemblPlants:GSMUA_Achr10P04310_001 | EnsemblPlants:GSMUA_Achr10T04310_001 |
| InterPro:IPR036188 | UniProt:M0RFA8 | PFAM:PF00996 | PRINTS:PR00891 | PRINTS:PR00892 | PANTHER:PTHR11787 |
| PANTHER:PTHR11787:SF10 | InterPro:RabGDI | SUPFAM:SSF51905 | UniParc:UPI000296CFE0 | : | : |
Description
Rab GDP dissociation inhibitor alpha [Source:GMGC_GENE;Acc:GSMUA_Achr10G04310_001]
Coordinates
chr10:+:13975835..13983683
Molecular Weight (calculated)
49886.0 Da
IEP (calculated)
7.321
GRAVY (calculated)
-0.310
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGFKV LHMDRNGYYG GEYDLILPKD ENGWFRGSDK PPAYLGPSRD YNVDMIPKFM MANGTLMCTL VHTNVTKYLS
101: FKTVDGSYVF NKGKIHKVPA TDMEALKSSL MGLFEKRRAR KFFIYVQNYD ESDPKTHEGL NLSRVTTRQL ISKYGLNDNT TEFIGHALAL HRDDQYLNEP
201: ALDTVKRMKM YAASLSRFQG GSPYIYPLYG LGELPQAFAR LSAAYGGTYM LNKPECKVEF DMRGKAYGVT SEGTTARCKK VVCDPSYLPN KVRKVGKVAR
301: AIAIMSHPIP DTNWSHSVQI ILPQKQLGRK SDMYLFCCSY LHKVAPKGKF IAFVSTEAET DRPEVELKPG IDLLGPVDEL FFETYDRYKP INTPSSDHCY
401: ISTSHDATTH FESTVMDVLS MYTMITGKTI DLNMDPSAAG IAIE
101: FKTVDGSYVF NKGKIHKVPA TDMEALKSSL MGLFEKRRAR KFFIYVQNYD ESDPKTHEGL NLSRVTTRQL ISKYGLNDNT TEFIGHALAL HRDDQYLNEP
201: ALDTVKRMKM YAASLSRFQG GSPYIYPLYG LGELPQAFAR LSAAYGGTYM LNKPECKVEF DMRGKAYGVT SEGTTARCKK VVCDPSYLPN KVRKVGKVAR
301: AIAIMSHPIP DTNWSHSVQI ILPQKQLGRK SDMYLFCCSY LHKVAPKGKF IAFVSTEAET DRPEVELKPG IDLLGPVDEL FFETYDRYKP INTPSSDHCY
401: ISTSHDATTH FESTVMDVLS MYTMITGKTI DLNMDPSAAG IAIE
001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
Arabidopsis Description
REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.