Factsheet for GSMUA_Achr9P03980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	91.03	91.03
GSMUA_Achr10P...	Banana	cytosol	90.36	90.36
Zm00001d029596_P001	Maize	cytosol, extracellular	87.22	87.02
EER92083	Sorghum	cytosol	87.0	86.8
Os03t0277000-01	Rice	plasma membrane	86.77	86.58
TraesCS4B01G205900.1	Wheat	cytosol, golgi	86.55	86.35
TraesCS4D01G206900.1	Wheat	cytosol	86.32	86.13
GSMUA_Achr7P23620_001	Banana	cytosol	82.74	83.48
GSMUA_Achr6P18380_001	Banana	cytosol	82.06	81.88
TraesCS4A01G098400.1	Wheat	cytosol	86.32	79.55
GSMUA_Achr10P...	Banana	cytosol	77.58	77.93
HORVU4Hr1G059240.2	Barley	cytosol	86.55	74.09
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.61	72.17
GSMUA_Achr7P02920_001	Banana	cytosol	14.8	64.71
GSMUA_Achr6P03390_001	Banana	peroxisome	22.87	20.73

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr9G03980_001	EnsemblPlants:GSMUA_Achr9P03980_001	EnsemblPlants:GSMUA_Achr9T03980_001
InterPro:IPR036188	UniProt:M0TXA7	PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787
PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000296C02C	SEG:seg

Description

Rab GDP dissociation inhibitor alpha [Source:GMGC_GENE;Acc:GSMUA_Achr9G03980_001]

Coordinates

chr9:-:2691910..2696579

Molecular Weight (calculated)

50006.4 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.354

Length

446 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLSLVQ LWKRFRSNDK PPELLGSSRE YNVDMIPKFM MANGTLVRVL IRTGVTKYLN
101: FKAVDGSFVY NNGKIYKVPA TDVEALKSTL MGLFEKRRAR KFFIYVQDYE DDEPKSHEGL DLNKVTTRDV ISKYGLEDNT VDFIGHALAL HRDDSYLDEP
201: AIYTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPECKVEF DTDGKAYGVT SEGETAKCKK VVCDPSYLPD KVKKVGRVAR
301: AICIMSHPIP NTNDSHSVQI ILPQKQLGRR SDMYVFCCSY AHNVAPKGKY IAFVSTEAET DHPETELKPG IDLLGPVDET FFDIYDRYEP ANHDEQDNCF
401: ISTSYDATTH FESTVQDVIS MYKKITGKEL DLSVDLSAAS AAGEDA

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.