Factsheet for GSMUA_Achr6P03390_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15860_001
GSMUA_Achr5P06170_001
GSMUA_Achr6P00700_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	GSMUA_Achr2P15860_001	AT5G47520.1	21798944
AT3G06540.1	GSMUA_Achr5P06170_001	AT5G47520.1	21798944
AT3G06540.1	GSMUA_Achr6P00700_001	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	8.33	56.94
Zm00001d004622_P001	Maize	cytosol	8.33	56.94
TraesCS3A01G185700.1	Wheat	cytosol	52.64	46.25
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	52.64	46.17
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	52.44	46.07
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	52.44	46.07
KXG32246	Sorghum	cytosol, nucleus, peroxisome	50.41	44.36
Zm00001d008269_P001	Maize	peroxisome	50.2	44.34
Zm00001d040408_P003	Maize	peroxisome	49.59	43.96
Os01t0269100-01	Rice	plasma membrane	27.24	41.49
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	46.34	41.23
VIT_04s0044g00070.t01	Wine grape	peroxisome	46.54	41.19
KRH28917	Soybean	cytosol, peroxisome, plastid	45.73	40.83
AT3G06540.1	Thale cress	cytosol	44.31	38.72
PGSC0003DMT400003853	Potato	peroxisome	43.5	38.7
CDY05274	Canola	plastid	44.11	38.68
Solyc02g082730.2.1	Tomato	extracellular	43.09	38.41
CDY24684	Canola	cytosol	43.5	37.81
Bra029586.1-P	Field mustard	peroxisome	43.5	37.74
CDY34947	Canola	cytosol, plastid, vacuole	41.46	37.23
Zm00001d009201_P001	Maize	cytosol	11.18	32.54
KRH05675	Soybean	extracellular, vacuole	11.38	28.14
GSMUA_Achr7P23620_001	Banana	cytosol	20.73	23.08
GSMUA_Achr9P03980_001	Banana	cytosol	20.73	22.87
GSMUA_Achr10P...	Banana	cytosol	20.53	22.65
GSMUA_Achr10P...	Banana	cytosol	20.12	22.2
GSMUA_Achr6P18380_001	Banana	cytosol	19.92	21.92
GSMUA_Achr10P...	Banana	cytosol	19.51	21.62
GSMUA_Achr7P02920_001	Banana	cytosol	3.05	14.71
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	2.44	10.43

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0017137	GO:GO:0019538	GO:GO:0030234	GO:GO:0050790	GO:GO:2000541	EnsemblPlantsGene:GSMUA_Achr6G03390_001
EnsemblPlants:GSMUA_Achr6P03390_001	EnsemblPlants:GSMUA_Achr6T03390_001	InterPro:IPR036188	UniProt:M0T3T7	PFAM:PF00996	PRINTS:PR00891
PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0002953E49	:

Description

Putative Rab proteins geranylgeranyltransferase component A 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G03390_001]

Coordinates

chr6:-:2328606..2334100

Molecular Weight (calculated)

53570.0 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.077

Length

492 amino acids

Sequence
(BLAST)

001: MAADIETSSS SSLQNQYPTI DPTTFDLIVC GTAVDLRRLR LYSDVETSGN FPEPSKGFLV DLPGPRILYC ADAMVDLLLR SGASHHVEFK SVDATLIFWE
101: GKLCAVPDSR QAIFRDRTLG LAEKNQMMKF LKLVQGHIDS DQCGNGGTAE EDGLVRIPAD DLEMPFADFL RSKRLPPKIR AMILYAITLA DYDQENAESS
201: KKLIVTKDGI ESLALYTKSV ARFPNALGAF IYPMYGHGEL PQAFCRCAAV KGALYVLHMP VCALLFDKET GKYKGVKLAS GQDIFSHQVV MDPSFEVSSS
301: ISPPNVACEG LNASSLSGRV AKGVCITGSS ILPDSSNVLV IFPPKSLYSD QTATIQVLQL SSNVAVCPPG LFVVYLSTPC DDAISGKKHI NGAMNALFHI
401: TNVDGPVTCH LSTEGSEGEN KPALKWSLVY GQELKQASFG AVCSSPMPDE NLDYRNILET TKKLFTTMYP EEEFFRKIPA PDNAEDDSSL PE

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.