CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97606

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	EER97606	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008269_P001	Maize	peroxisome	87.84	88.15
Zm00001d040408_P003	Maize	peroxisome	86.05	86.67
GSMUA_Achr6P03390_001	Banana	peroxisome	44.36	50.41
CDY34947	Canola	cytosol, plastid, vacuole	44.54	45.44
VIT_04s0044g00070.t01	Wine grape	peroxisome	45.08	45.32
CDY05274	Canola	plastid	44.19	44.03
CDY24684	Canola	cytosol	44.01	43.46
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	42.93	43.4
KRH28917	Soybean	cytosol, peroxisome, plastid	42.58	43.19
Bra029586.1-P	Field mustard	peroxisome	43.65	43.03
PGSC0003DMT400003853	Potato	peroxisome	42.4	42.86
Solyc02g082730.2.1	Tomato	extracellular	42.22	42.75
AT3G06540.1	Thale cress	cytosol	42.75	42.45
KRH05675	Soybean	extracellular, vacuole	13.24	37.19
EER92083	Sorghum	cytosol	20.04	25.06
EES18242	Sorghum	cytosol	19.86	24.94
KXG22017	Sorghum	cytosol	19.5	24.49
EER98346	Sorghum	cytosol	19.5	24.44

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	UniProt:A0A1B6Q2T8	InterPro:FAD/NAD-bd_sf
InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0003824	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005968	GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0017137	GO:GO:0018344	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790
GO:GO:2000541	InterPro:IPR036188	EnsemblPlants:KXG32246	ProteinID:KXG32246	ProteinID:KXG32246.1	PFAM:PF00996
PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort	EnsemblPlantsGene:SORBI_3003G126600
SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI00081AC853	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:11609122..11612704

Molecular Weight (calculated)

59846.8 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.047

Length

559 amino acids

Sequence
(BLAST)

001: MAEAAADSSN SAVDGGGGGS VQNDYPTIDP TSFDVVLCGT GLPESVLAAA CAAAGKTVLH VDPSPFYGSL YSSIPLSSLA SFLSPEASPP TSTAAAAASD
101: SHTVVDLHRR SVYSDVETSG AAPEPARRFT IDLVGPRVLY CADEAVDLLL RSGGSHHVEF KSVDGGSLLY WEGCLYPVPD SRQAIFKDTT LKLKEKNVLF
201: RFFKFVQAHI AAASASADET GQGDASAKIP EEDLDLPFVE FLKKQGLPPK MRAVVLYAIA MGDYDQDCAD PCEKLITTRE GIQTIALYSS SIGRFSNAEG
301: AFIYPMYGHG ELPQAFCRCA AVKGTLYVLR MPVSALLMDE EKKHFVGARL ASGQDILCQQ LIIDPSYKIP NLDVPFDGSH SHFPRKVARG ICIISKSVKQ
401: GSSNVLVIFP PKSLEEQQVA AVRLLQLSSN LAVCPSGMFM AYLSTPCTDV SAGKQCIKKA IDALFSPQAS DGSEGHLETA SESTEDVKPT VIWSCVYVQE
501: ITQGTSGSLL SCPMPDEYLD YRNILGSTKK LFASIYPDEE FLPKKSAPVY ADDDSDSAE

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.