CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022251_P002	Maize	cytosol	97.75	97.75
Os07t0634200-01	Rice	plasma membrane	91.89	92.73
TraesCS2D01G158800.1	Wheat	cytosol	92.79	92.38
HORVU2Hr1G027660.2	Barley	cytosol	92.79	92.38
TraesCS2A01G153500.1	Wheat	cytosol	91.89	91.48
TraesCS2B01G178600.1	Wheat	cytosol	90.09	85.11
GSMUA_Achr2P15860_001	Banana	cytosol	85.59	84.82
GSMUA_Achr6P00700_001	Banana	cytosol	83.33	84.09
GSMUA_Achr5P06170_001	Banana	cytosol	61.71	81.07
AT5G47520.1	Thale cress	cytosol	80.18	80.54
CDY25963	Canola	cytosol	78.83	79.91
Bra017482.1-P	Field mustard	cytosol	79.28	79.28
CDY41053	Canola	cytosol	79.28	79.28
CDY40561	Canola	cytosol	78.83	79.19
CDX77774	Canola	cytosol	78.83	79.19
Bra022136.1-P	Field mustard	cytosol	78.83	79.19
KRH34233	Soybean	cytosol	79.28	78.92
CDY28925	Canola	cytosol	78.38	78.73
CDY17729	Canola	cytosol	78.38	78.73
Bra024937.1-P	Field mustard	cytosol	77.93	77.93
KRG92561	Soybean	cytosol	79.28	77.88
PGSC0003DMT400034567	Potato	cytosol	78.83	77.78
PGSC0003DMT400021794	Potato	cytosol	76.58	75.22
Solyc05g054150.2.1	Tomato	cytosol	75.68	74.34
OQU80857	Sorghum	cytosol	61.71	63.43
Solyc11g012460.1.1	Tomato	plastid	77.48	62.32
OQU87831	Sorghum	cytosol	22.52	49.51
OQU77614	Sorghum	cytosol	20.72	44.23

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8063525	UniProt:C5X394	EnsemblPlants:EER97606	ProteinID:EER97606
ProteinID:EER97606.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	ProteinID:OQU90327.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3002G388100	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A83A14	RefSeq:XP_002461085.1	:	:

Description

hypothetical protein

Coordinates

chr2:+:74192743..74195806

Molecular Weight (calculated)

24483.8 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.292

Length

222 amino acids

Sequence
(BLAST)

001: MAYDGDDGQS QDYLFKIVLL GDSSVGKSNL LARFARNEFY PNSKSTIGVE FQTQKLVIDG KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFDSVGRWLN ELHTHSDMNV VTILVGNKTD LKHAREVSTA EGQALAEAQG LFFMETSALD SSNVAAAFQT VVKEIYSILS RKVFQSLEQK KSELQSLSNG
201: KAVVLQGETN QTSSGGRWCC SS

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.