Factsheet for Bra017482.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41053	Canola	cytosol	100.0	100.0
CDY25963	Canola	cytosol	98.2	99.54
AT5G47520.1	Thale cress	cytosol	95.5	95.93
Bra024937.1-P	Field mustard	cytosol	95.05	95.05
Bra022136.1-P	Field mustard	cytosol	93.24	93.67
KRH34233	Soybean	cytosol	86.94	86.55
KRG92561	Soybean	cytosol	86.49	84.96
PGSC0003DMT400034567	Potato	cytosol	83.33	82.22
PGSC0003DMT400021794	Potato	cytosol	81.98	80.53
Solyc05g054150.2.1	Tomato	cytosol	81.08	79.65
EER97606	Sorghum	cytosol	79.28	79.28
Zm00001d022251_P002	Maize	cytosol	79.28	79.28
Os07t0634200-01	Rice	plasma membrane	77.93	78.64
GSMUA_Achr2P15860_001	Banana	cytosol	78.83	78.12
TraesCS2D01G158800.1	Wheat	cytosol	77.93	77.58
HORVU2Hr1G027660.2	Barley	cytosol	77.48	77.13
TraesCS2A01G153500.1	Wheat	cytosol	77.03	76.68
GSMUA_Achr6P00700_001	Banana	cytosol	75.23	75.91
GSMUA_Achr5P06170_001	Banana	cytosol	55.86	73.37
TraesCS2B01G178600.1	Wheat	cytosol	76.13	71.91
Solyc11g012460.1.1	Tomato	plastid	82.88	66.67
Bra032453.1-P	Field mustard	cytosol	62.16	63.3
Bra040376.1-P	Field mustard	cytosol	60.36	62.91
Bra000290.1-P	Field mustard	cytosol	59.91	62.44
Bra005650.1-P	Field mustard	cytosol	61.26	62.1
Bra004747.1-P	Field mustard	cytosol	59.46	61.97
Bra022861.1-P	Field mustard	cytosol	59.91	61.01
Bra025060.1-P	Field mustard	cytosol	53.6	55.09
Bra012576.1-P	Field mustard	cytosol	51.35	53.02
Bra016565.1-P	Field mustard	cytosol	51.35	50.44
Bra015978.1-P	Field mustard	cytosol	49.1	46.98
Bra016699.1-P	Field mustard	cytosol, mitochondrion	22.52	40.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra017482	EnsemblPlants:Bra017482.1	EnsemblPlants:Bra017482.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DLV1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025423D1	:	:

Description

AT5G47520 (E=1e-116) AtRABA5a | AtRABA5a (Arabidopsis Rab GTPase homolog A5a); GTP binding

Coordinates

chrA09:+:15700985..15701732

Molecular Weight (calculated)

24446.9 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.316

Length

222 amino acids

Sequence
(BLAST)

001: MAFHSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKIDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRKQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDIREVPTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPPASLSN
201: GKKVVIPSEA QGEAKKGGCC ST

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.