Factsheet for Bra016699.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96853	Canola	mitochondrion	91.2	76.0
Solyc10g050030.1.1	Tomato	cytosol	26.4	41.77
GSMUA_Achr2P22260_001	Banana	cytosol	34.4	41.75
VIT_00s0625g00030.t01	Wine grape	cytosol	24.8	28.7
Zm00001d048223_P001	Maize	cytosol	24.8	27.68
Bra025060.1-P	Field mustard	cytosol	44.8	25.93
Bra012576.1-P	Field mustard	cytosol	44.0	25.58
Zm00001d028003_P001	Maize	cytosol	29.6	23.12
Bra022136.1-P	Field mustard	cytosol	40.0	22.62
Bra024937.1-P	Field mustard	cytosol	40.0	22.52
Bra017482.1-P	Field mustard	cytosol	40.0	22.52
Bra000290.1-P	Field mustard	cytosol	36.0	21.13
Bra040376.1-P	Field mustard	cytosol	36.0	21.13
Bra004747.1-P	Field mustard	cytosol	36.0	21.13
Bra032453.1-P	Field mustard	cytosol	35.2	20.18
Bra015978.1-P	Field mustard	cytosol	36.8	19.83
Bra016565.1-P	Field mustard	cytosol	35.2	19.47
Bra022861.1-P	Field mustard	cytosol	33.6	19.27
Bra005650.1-P	Field mustard	cytosol	32.8	18.72

Protein Annotations

EnsemblPlants:Bra016699.1	EnsemblPlants:Bra016699.1-P	EnsemblPlantsGene:Bra016699	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase
InterPro:Small_GTPase	PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	PFAM:PF00071	PRINTS:PR00449	SEG:seg
SMART:SM00175	SUPFAM:SSF52540	UniParc:UPI0002545C71	UniProt:M4DJM1	MapMan:35.1	:

Description

AT5G45750 (E=3e-015) AtRABA1c | AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding

Coordinates

chrA08:+:19605200..19605936

Molecular Weight (calculated)

14625.4 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.594

Length

125 amino acids

Sequence
(BLAST)

001: MALIVEGKSV KRLSKFLQSP TRSTDQQSRS HFIIKDYHQQ SRKLLHHFGE FISNLSLHLH THLSLSTIGV EFATQNLKVD EKVIKAQIWD TAGQERYRAF
101: TSAYYRGAFE NVDRWFKEPQ EPHIP

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.