Factsheet for Bra012576.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025060.1-P	Field mustard	cytosol	84.65	84.26
VIT_10s0003g01620.t01	Wine grape	cytosol	32.09	79.31
Zm00001d005612_P001	Maize	cytosol	39.07	75.68
Os01t0667600-01	Rice	cytosol, golgi, plasma membrane, plastid	70.23	67.41
KRG93819	Soybean	cytosol	28.84	65.26
OQU87831	Sorghum	cytosol	29.77	63.37
CDY51631	Canola	cytosol	28.37	60.4
GSMUA_Achr7P23610_001	Banana	cytosol	49.3	59.89
OQU77614	Sorghum	cytosol	28.37	58.65
Bra004747.1-P	Field mustard	cytosol	52.56	53.05
Bra040376.1-P	Field mustard	cytosol	52.09	52.58
Bra000290.1-P	Field mustard	cytosol	51.63	52.11
Bra032453.1-P	Field mustard	cytosol	52.09	51.38
Bra024937.1-P	Field mustard	cytosol	53.02	51.35
Bra017482.1-P	Field mustard	cytosol	53.02	51.35
Bra022136.1-P	Field mustard	cytosol	52.56	51.13
Bra016565.1-P	Field mustard	cytosol	53.49	50.88
Bra022861.1-P	Field mustard	cytosol	51.16	50.46
Bra015978.1-P	Field mustard	cytosol	53.95	50.0
Bra005650.1-P	Field mustard	cytosol	49.77	48.86
Bra016699.1-P	Field mustard	cytosol, mitochondrion	25.58	44.0
Zm00001d020102_P001	Maize	cytosol	32.09	34.33
Zm00001d032569_P001	Maize	plastid	19.07	24.4

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra012576	EnsemblPlants:Bra012576.1	EnsemblPlants:Bra012576.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4D7W6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025403C9	:	:

Description

AT4G18800 (E=6e-109) ATHSGBP, ATRAB11B, ATRABA1D | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding

Coordinates

chrA03:-:23447325..23448182

Molecular Weight (calculated)

23950.2 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.331

Length

215 amino acids

Sequence
(BLAST)

001: MAGYKADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEVSL ESKSTIGVEF ATRSLNVKDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTEPNIV VMLLGNKSDL RHLIAVQTED AKSFAENESL YFMETSALEA TNVENAFSEV LTQIHQVVSK KAMEAGDDSN SGNVFKGEKI
201: DLDVSAVKKT GCCSN

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.