Factsheet for Bra016565.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96730	Canola	cytosol	100.0	100.0
AT1G18200.1	Thale cress	cytosol	87.61	86.46
Bra015978.1-P	Field mustard	cytosol	80.53	78.45
KRH48616	Soybean	cytosol	24.78	75.68
VIT_17s0000g02500.t01	Wine grape	cytosol	70.35	72.94
KRH39102	Soybean	cytosol	53.98	67.78
KRH41826	Soybean	cytosol	65.04	67.43
KRH60507	Soybean	cytosol	64.16	66.82
PGSC0003DMT400014741	Potato	cytosol	65.49	66.37
KRH48618	Soybean	cytosol	40.27	63.64
Solyc03g118820.2.1	Tomato	plastid	64.6	60.33
Bra025060.1-P	Field mustard	cytosol	51.33	53.7
Bra012576.1-P	Field mustard	cytosol	50.88	53.49
Bra040376.1-P	Field mustard	cytosol	50.0	53.05
Bra022136.1-P	Field mustard	cytosol	50.88	52.04
Bra024937.1-P	Field mustard	cytosol	50.88	51.8
Bra017482.1-P	Field mustard	cytosol	50.44	51.35
Bra032453.1-P	Field mustard	cytosol	49.12	50.92
Bra004747.1-P	Field mustard	cytosol	47.79	50.7
Bra000290.1-P	Field mustard	cytosol	47.79	50.7
Bra022861.1-P	Field mustard	cytosol	47.35	49.08
Bra005650.1-P	Field mustard	cytosol	46.9	48.4
Bra016699.1-P	Field mustard	cytosol, mitochondrion	19.47	35.2

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016565	EnsemblPlants:Bra016565.1	EnsemblPlants:Bra016565.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DJ87	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025470FE	:	:

Description

AT1G18200 (E=4e-107) AtRABA6b | AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding / GTPase/ protein binding

Coordinates

chrA08:+:19082347..19083476

Molecular Weight (calculated)

25438.0 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.326

Length

226 amino acids

Sequence
(BLAST)

001: MAEETYDEEC DYLFKAVLIG DSAVGKSNLL SRFTRDEFRL DSKPTIGVDF AYRNVRVCGK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRQT
101: FQNIKKWLSE LRGFSSPDTV VVLVGNKSDL QQSREVDEEE GKSLAELEGL YFLETSALQN QNVEEAFLSM IERIHEVLIQ KIALDNKSNG DDGDVPVVPT
201: GREIVNIDEV TATRPLSTSF SNCCLK

Best Arabidopsis Sequence Match ( AT1G18200.1 )
(BLAST)

001: MAEESYDEEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVDF AYRNVRVGDK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRIT
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK

Arabidopsis Description

RABA6BRABA6b [Source:UniProtKB/TrEMBL;Acc:A0A178WEX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.