CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41826	Soybean	cytosol	96.31	95.87
KRH48616	Soybean	cytosol	30.41	89.19
KRH39102	Soybean	cytosol	66.36	80.0
VIT_17s0000g02500.t01	Wine grape	cytosol	77.42	77.06
KRH48618	Soybean	cytosol	49.77	75.52
PGSC0003DMT400014741	Potato	cytosol	70.05	68.16
CDX72997	Canola	cytosol	68.66	64.78
AT1G18200.1	Thale cress	cytosol	67.74	64.19
Bra016565.1-P	Field mustard	cytosol	66.82	64.16
CDX83861	Canola	cytosol	66.82	64.16
CDX96730	Canola	cytosol	66.82	64.16
Bra015978.1-P	Field mustard	cytosol	68.2	63.79
AT1G73640.1	Thale cress	cytosol	67.28	62.66
Solyc03g118820.2.1	Tomato	plastid	69.59	62.4
KRH46603	Soybean	cytosol	50.69	51.64
KRG93819	Soybean	cytosol	22.58	51.58
KRH46865	Soybean	endoplasmic reticulum	48.85	48.4
KRH01822	Soybean	cytosol	48.85	48.4
KRH34233	Soybean	cytosol	48.85	47.53
KRG92561	Soybean	cytosol	48.85	46.9
KRH55234	Soybean	cytosol	15.21	42.31

Protein Annotations

EntrezGene:100781746	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02003367	EnsemblPlantsGene:GLYMA_05G244700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1K5D8
EnsemblPlants:KRH60507	ProteinID:KRH60507	ProteinID:KRH60507.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF625	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233A595

Description

hypothetical protein

Coordinates

chr5:+:41895267..41898509

Molecular Weight (calculated)

24514.2 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.305

Length

217 amino acids

Sequence
(BLAST)

001: MADAFDEECD YLFKAVLIGD SGVGKSNMLS RFAKDEFRLD SKPTIGVEFA YRNIRVGDKL IKAQIWDTAG QERFRAITSS YYRGALGAML VYDISMRSSY
101: ENVSKWLLEL REFGGEDMVV VLVGNKCDLD ESREVEKEEG KGFAETEGLC FMETSALKNL NVEEVFLQMI TRIYDMTSQK NLAAKMEEQP INLLNGKEIH
201: IADEVTATKQ TSTCCSR

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.