CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60507	Soybean	cytosol	95.87	96.31
KRH48616	Soybean	cytosol	31.19	91.89
KRH39102	Soybean	cytosol	66.51	80.56
VIT_17s0000g02500.t01	Wine grape	cytosol	79.36	79.36
KRH48618	Soybean	cytosol	49.54	75.52
PGSC0003DMT400014741	Potato	cytosol	70.18	68.61
CDX72997	Canola	cytosol	69.72	66.09
Bra015978.1-P	Field mustard	cytosol	69.27	65.09
Bra016565.1-P	Field mustard	cytosol	67.43	65.04
CDX96730	Canola	cytosol	67.43	65.04
CDX83861	Canola	cytosol	66.97	64.6
AT1G18200.1	Thale cress	cytosol	67.43	64.19
AT1G73640.1	Thale cress	cytosol	68.35	63.95
Solyc03g118820.2.1	Tomato	plastid	69.72	62.81
KRH46603	Soybean	cytosol	51.83	53.05
KRG93819	Soybean	cytosol	22.94	52.63
KRH46865	Soybean	endoplasmic reticulum	50.0	49.77
KRH01822	Soybean	cytosol	50.0	49.77
KRH34233	Soybean	cytosol	50.0	48.88
KRG92561	Soybean	cytosol	50.0	48.23
KRH55234	Soybean	cytosol	15.14	42.31

Protein Annotations

EntrezGene:100784107	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02004781	EnsemblPlantsGene:GLYMA_08G053400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1KQK0
EnsemblPlants:KRH41826	ProteinID:KRH41826	ProteinID:KRH41826.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF625	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00023380E4

Description

hypothetical protein

Coordinates

chr8:-:4128159..4131417

Molecular Weight (calculated)

24507.2 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.325

Length

218 amino acids

Sequence
(BLAST)

001: MADAFDEECD YLFKAVLIGD SGVGKSNLLS RFAKDEFRLD SKPTIGVEFA YRNIKVGDKL IKAQIWDTAG QERFRAITSS YYRGALGAML VYDISRRSSY
101: ENVSKWLLEL REFGGEDMVV VLVGNKCDLD GQSREVDKEE GKGFAETEGL CFMETSALKN LNVEEVFLQM ITRIYDMTSQ KNLAAKMDEK PINLLNGKEI
201: HIADEVTATK QSSTCCSR

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.