Factsheet for Bra015978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72997	Canola	cytosol	97.41	98.26
AT1G73640.1	Thale cress	cytosol	92.67	92.27
Bra016565.1-P	Field mustard	cytosol	78.45	80.53
KRH48616	Soybean	cytosol	25.0	78.38
VIT_17s0000g02500.t01	Wine grape	cytosol	71.12	75.69
KRH39102	Soybean	cytosol	53.88	69.44
KRH41826	Soybean	cytosol	65.09	69.27
PGSC0003DMT400014741	Potato	cytosol	65.95	68.61
KRH60507	Soybean	cytosol	63.79	68.2
KRH48618	Soybean	cytosol	39.66	64.34
Solyc03g118820.2.1	Tomato	plastid	66.38	63.64
Bra025060.1-P	Field mustard	cytosol	51.72	55.56
Bra012576.1-P	Field mustard	cytosol	50.0	53.95
Bra040376.1-P	Field mustard	cytosol	48.28	52.58
Bra004747.1-P	Field mustard	cytosol	46.12	50.23
Bra022136.1-P	Field mustard	cytosol	46.98	49.32
Bra024937.1-P	Field mustard	cytosol	46.98	49.1
Bra017482.1-P	Field mustard	cytosol	46.98	49.1
Bra032453.1-P	Field mustard	cytosol	46.12	49.08
Bra000290.1-P	Field mustard	cytosol	44.83	48.83
Bra022861.1-P	Field mustard	cytosol	44.83	47.71
Bra005650.1-P	Field mustard	cytosol	43.53	46.12
Bra016699.1-P	Field mustard	cytosol, mitochondrion	19.83	36.8

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra015978	EnsemblPlants:Bra015978.1	EnsemblPlants:Bra015978.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	UniProt:M4DHK1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF857	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002541D40	SEG:seg	:	:	:

Description

AT1G73640 (E=1e-101) AtRABA6a | AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding

Coordinates

chrA07:+:19971561..19974054

Molecular Weight (calculated)

25882.5 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.289

Length

232 amino acids

Sequence
(BLAST)

001: MAEDSYEEEC DYLFKSVLIG DSAVGKSNLL SRFSKDEFRL DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LREFANPDTV VVLVGNKSDL RQSREVEEEE GKSLAESEGL CFLETSALEN VNVEEAFLVM IKRIHEVVTQ RIASDNKSNG VATSHVNGNG
201: NGTVVPVGKE IVNIHEVTAT QPVSSSSKCC FQ

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.